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neheller / kits19

The official repository of the 2019 Kidney and Kidney Tumor Segmentation Challenge
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Test set submission instructions are unclear #30

Closed FabianIsensee closed 5 years ago

FabianIsensee commented 5 years ago

Hi there, I took this from Rules -> Submission format on the KiTS Homepage. Not sure if a github issue is the correct place of asking this, so please feel free to redirect me.

Predictions should be submitted as a zip (your-teamname.zip) archive of .nii.gz files named prediction_00210.nii.gz, ..., prediction000299.npy corresponding to the ordered list of 90 test cases. That is, you should generate each of these prediction files in a particular directory, and then from that directory, run the following command: zip your-teamname.zip case*.nii.gz

The name of the predicted segmentations is all over the place. First it's prediction_XXXXX.nii.gz, then the next one is prediction_XXXXXX.npy and finally in the last line it is case_??.nii.gz. Would be great if you could update this description.

Thank you so much for organizing this challenge and putting all the effort into this! It's a really nice dataset and also quite nicely annotated, despite the occasional hiccup people seem to have noticed regarding some of the cases!

Best, Fabian

neheller commented 5 years ago

Yikes, thanks for bringing this to my attention!

I will clean this up later today and then make a post in the forum.

Thanks for the kind words about the challenge :)

neheller commented 5 years ago

I've updated the rules and the forum post can be found here. Thanks again for spotting this.

FabianIsensee commented 5 years ago

Thank you for fixing this so quickly :-) Best, Fabian