Closed WillX1998 closed 3 years ago
I'm not very familiar with MATLAB. Are you able to run bash? This script should be able to download the imaging data. Make sure to run it from the repository root.
#!/bin/bash
if [ ! -d "data" ]
then
mkdir data
fi
for I in {0..299}
do
DSTP=$(printf "data/case_%05d" $I)
DSTF=$(printf "data/case_%05d/imaging.nii.gz" $I)
if [ ! -d $DSTP ]
then
mkdir $DSTP
fi
if [ ! -f $DSTF ]
then
wget https://kits19.sfo2.digitaloceanspaces.com/master_$(printf "%05d" $I).nii.gz
mv master_$(printf "%05d" $I).nii.gz $DSTF
fi
done
Hi,
Thank you for responding. I've never used Bash before. Is that the only way to download the imaging data?
Can you please walk me through using Git Bash to download the images? I tried running the code and it said the images were not found.
I'm not sure why the images wouldn't be found since it works on my end. There must be some other problem when using the above with Git Bash. How about the following MATLAB script?
if ~exist('data', 'dir')
mkdir('data');
end
for i = 0:299
case_dir = fullfile('data', sprintf('case_%05d', i));
if ~exist(case_dir, 'dir')
mkdir(case_dir);
end
websave(fullfile(case_dir, 'imaging.nii.gz'), sprintf('https://kits19.sfo2.digitaloceanspaces.com/master_%05d.nii.gz', i), 'timeout',20);
end
Hi I managed to get the images. Thank you!
Hi,
Does anyone know how to access the actual image data, not the segmentation images, without using Python? I'm trying to do my own segmentation using MATLAB.
Thank you.