FabianIsensee commented 1 year ago

metrics, ranking and segmentations as uint8

Description

Added metrics and ranking with minor modifications/simplifications from kits21. Modifications include own implementation of Dice, removal of sampling (not needed for 23) and code restructuring.

Made segmentations uint8 because there is no need for int32 with 4 labels (waste of RAM)

Added documentation (located in kits23.evaluation) for how to run evaluation and ranking

Checklist

[x] Merged latest master
[there is no version number] Updated version number in README.md
[this file does not exist] Added changes to changelog.md
[x] Updated version number in setup.py
[x - but why do we need this file? kits23.version will give the version defined in setup.py. There is no need to have this in addition] Version number in kits23/_version.py matches setup.py
[ ] (only when updating dataset) Ran annotation.import to completion

neheller commented 1 year ago

@FabianIsensee are you sure about the version number thing? It doesn't seem to work for me.

FabianIsensee commented 1 year ago

@FabianIsensee are you sure about the version number thing? It doesn't seem to work for me.

I yield, you are correct!

neheller / kits23