Don't bunde the data

[ivan-aksamentov]

🙋 Feature Request

🔦 Context

Currently all the data (default scenarios, case counts, age and severity distributions) https://github.com/neherlab/covid19_scenarios/tree/master/src/assets/data is being bundled into the app directly with webpack, using static import. For example: https://github.com/neherlab/covid19_scenarios/blob/00fbc711fb5e0b4fee28e60858edeca69e9291af/src/io/defaults/getAgeDistributionData.ts#L3

This is an easy solution

• one line of code to load the data
• data is always guaranteed to be present

but is not very practical:

• users rarely need more then one or a few regions (see also https://github.com/neherlab/covid19_scenarios/issues/743)
• updating case counts and scenarios requires a new app release

😯 Describe the feature

We want to evaluate different mechanisms of loading and updating the data. The new mechanism should:

• allow for independent releases of the app and data
• ensure robustness of data loading
• not change the schemas too much, to allow backwards compat for existing URLs and file imports/exports

💻 Examples

💁 Possible Solution

For example, we could load the data to the public S3 bucket and the load it with a plain HTTP request and validating it afterwards.

We are open for other proposals.

Related

• https://github.com/neherlab/covid19_scenarios/issues/645
• https://github.com/neherlab/covid19_scenarios/issues/743

[r-s-rai]

Hello,

Would it be possible to schedule a meeting about how you want the data implemented? My group and I were thinking about using an Amazon S3 bucket to store the data, but we wanted to coordinate with you guys since you'll be the ones in charge of the S3 bucket and managing it.

[rneher]

sure, let's discuss. How about tomorrow (Thu) late afternoon CEST, morning East Coast?

[r-s-rai]

That sounds good. Do you want to hold the meeting over Zoom, and what exact time would you like to meet?

---

From: Richard Neher notifications@github.com Sent: Wednesday, July 1, 2020 3:04 AM To: neherlab/covid19_scenarios covid19_scenarios@noreply.github.com Cc: Rai, Rohan r.s.rai@wustl.edu; Comment comment@noreply.github.com Subject: Re: [neherlab/covid19_scenarios] Don't bunde the data (#744)

sure, let's discuss. How about tomorrow (Thu) late afternoon CEST, morning East Coast?

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[ivan-aksamentov]

@r-s-rai Hello, sorry for missing the call.

I've setup a S3 bucket + cloudfront distribution + domain.

So the data is ready to be fetched from: https://data.covid19-scenarios.org/ageDistribution.json https://data.covid19-scenarios.org/scenarios.json https://data.covid19-scenarios.org/caseCounts.json https://data.covid19-scenarios.org/severityDistributions.json

This is just the contents of the src/assets/data directory. If you replace the corresponding imports in src/io/defaults/get* with fetches (e.g. using axios) this should do the trick.

CORS is enabled in both S3 and Cloudfront. However preflight (OPTIONS) requests will probably not work. So keep that in mind.

Note however that this simple solution would introduce all kinds of new issues:

• what if data schema needs to be changed? (like in #743) Developers cannot just modify the files on the bucket, because it will take down the production site.
• previously data was guaranteed to be always there, in the bundle. Now fetch can fail for any reason and this will require additional plumbing to mitigate.
• requests are now done in series: first the bundle, then the data. If we proceed with #743 the request chain will only become longer. Each request introduces additional latency.

So the entire adventure is probably more complicated than swapping the imports with requests.

Okay, sounds bad, but are there any other alternatives? I don't know. So why don't you give it a try and we will see where it goes. Please open a (draft) pull request early on to keep the discussion going.

Let me know if you have any questions or if you encounter any problems (especially with the AWS setup).

cc @rneher

[rneher]

@r-s-rai -- as you see in Ivan's comments above, the operation turns out to be slightly trickier than anticipated. We suggest starting first with just replacing bundling of the jsons by fetching. from there, one could then move towards fetching the case counts one-by-one.

[r-s-rai]

Hello Ivan,

Would it be possible to schedule a meeting with you sometime soon to discuss the code?

Thank you,

Rohan Rai

[DaveedaKinG]

Hello Rai

I think it’ll be a really nice idea to discuss With you on this

thanks

DaveedaKinG