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neherlab / ncov-simple

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feat: use hard masked sequences for distance colorings #11

Closed corneliusroemer closed 3 years ago

corneliusroemer commented 3 years ago

closes #7

corneliusroemer commented 3 years ago

Hard masking works but it does make the ORF1a:2529V #13 messiness more visible. I don't think it's caused by masking, it's always been there, just made more visible because 95 ladderization has been removed. Now we have nice straight edges. image

It's always been present, see this build from 10-31, the polytomies were just high up and thus less visible. image