How did a Delta from 2020-07 make it past diagnostic.py?

neherlab / ncov-simple

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How did a Delta from 2020-07 make it past diagnostic.py? #12

Closed corneliusroemer closed 2 years ago

corneliusroemer commented 2 years ago

Build: https://nextstrain.org/groups/neherlab/ncov/europe/2021-11-02?s=hCoV-19/Indonesia/JA-GS-EIJK-RSRM-0172/2020 Sequence: hCoV-19/Indonesia/JA-GS-EIJK-RSRM-0172/2020

corneliusroemer commented 2 years ago

All have bad clock deviation >15, so something off in diagnostic.py they are obvious misdates, there are 5 Indonesia sequences that should all be 2021 not 2020.

corneliusroemer commented 2 years ago

I hadn't integrated clade emergence into ncov-simple apparently see #19