Open corneliusroemer opened 2 years ago
So strange, why is it suddenly a problem and never before? https://nextstrain.org/groups/neherlab/ncov/europe/2021-11-02?c=gt-nuc_7851,17040&m=div
I think this is a tree building problem. Masking has made the polytomy bigger and iq-tree struggles.
Is there something we can do to help iq-tree? Like increase the number of iterations, seeds, etc? It only runs for ~20min which in the grand scheme of things is very short and could easily be extended without incurring any significant costs.
nuc:7851T is not masked. What's going on here? Why is it not all on one branch? Is this a broader iqtree problem just showing up drastically like this or something else?
Build for example: https://nextstrain.org/groups/neherlab/ncov/europe/2021-11-02?c=pango_usher>=nuc.7851T&m=div