I added frameshifts and insertions to the metadata in ingest. these should be then part of the metadata once the next ingest has run. The idea would then be to
collect all unique insertions and frameshifts
assigned them as a binary characters to leafs
do discrete state reconstruction on them (like the traits rule)
for each branch, collect the events (separately for insertions and deletions) that map to it
construct a label for insertions and deletions that can be displayed on the branch.
I added frameshifts and insertions to the metadata in ingest. these should be then part of the metadata once the next ingest has run. The idea would then be to