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neherlab / pan-genome-analysis

Processing pipeline for pan-genome visulization and exploration
http://pangenome.de
GNU General Public License v3.0
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python3 #27

Open JFsanchezherrero opened 5 years ago

JFsanchezherrero commented 5 years ago

Dear developers, I wonder if you are thinking in implementing a python3 version of this tool.

Thank you very much

rneher commented 5 years ago

yes. we are currently debating whether to do this as part of a bigger overhaul or a simply py23 conversion.

JFsanchezherrero commented 5 years ago

Wow! Great!

And do you have any scheduling for that? short-term, mid-term, long-term, undefined-term? I would be interested in using it within my pipeline but I would really appreciate if it is in python3. I can even help you somehow on the conversion from py2->3.

Thanks

rneher commented 5 years ago

I just pushed a py3 branch. This is basically running the entire codebase through 2to3 and fixing byte vs unicode string issues. It runs on the test data, but isn't otherwise tested. It would be great if you could give it a go and check whether it works.

JFsanchezherrero commented 5 years ago

Great! I will give it a try next week and let you know! Thank you very much!