Extracting data for individual genomes

neherlab / pan-genome-analysis

Processing pipeline for pan-genome visulization and exploration

http://pangenome.de

GNU General Public License v3.0

132 stars 37 forks source link

Extracting data for individual genomes #28

Open mdieser opened 5 years ago

mdieser commented 5 years ago

Hi - I have analyzed and uploaded 30 bacterial genomes from environmental isolates to the local host/8000. Is there a way to extract all duplication events individual genomes?

Thanks Markus

rneher commented 5 years ago

I don't think there is a straightforward way to do this. But the geneCluster.json contains a field which for each gene cluster lists all locus_tag/strain combinations that are part of the cluster. you could back out this info from there.

mdieser commented 5 years ago

I'll try that. Thanks.