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neherlab / pan-genome-analysis

Processing pipeline for pan-genome visulization and exploration
http://pangenome.de
GNU General Public License v3.0
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PanX visualization: No gene tree #47

Open MarietteEK opened 3 years ago

MarietteEK commented 3 years ago

Hi,

Since yesterday panX visualization wont show the gene tree (individual gene) for data I've already analyzed and looked at with the visualization panel and that used to work fine. Is there any update or did I mess up with some file ?

Also I have a question about the output files: for example for the core genome: In the "core_geneList.txt" I have 2363 GC.. in the "tmp_core" 1227 and in the visualization window 2965 are displayed. What's the difference between them ? same for the total number of gene

Can you help me with this issue ? Thank you @rneher

BenjaminHeinrich commented 3 years ago

Hi,

PanX gene tree and multiple alignments visualization stopped working on Chrome, but still works perfectly on browser like Safari. Is there a planned update to solve this problem ?

Thanks