Could this software uesd in animal?

neherlab / pan-genome-analysis

Processing pipeline for pan-genome visulization and exploration

http://pangenome.de

GNU General Public License v3.0

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Could this software uesd in animal? #48

Open ld9866 opened 2 years ago

ld9866 commented 2 years ago

Hi! I saw from the introduction that this software is designed for use by prokaryotes. We now want to do a simple mammalian diploid for pan-genomics research. I don’t know if your software can achieve good results on animal pan-genomes. Looking forward to hearing from you！

wook2014 commented 2 years ago

I have read the thesis of pan-X published in 2018, it mentioned the comparison between pan-X and other workflows including orthoFinder orthoMCL Roary and panOCT. As far as I know, orthoFinder orthoMCL support the orthologues analysis without the limitation that must analyse with prokaryotes. So I think pan-X also support eukaryotes. But I can't figure out how to use a new species configuration.

ld9866 commented 2 years ago

Thank you! I will test according to your suggestions and contact you if there are any questions. Have a good day!