neherlab / pan-genome-analysis

Processing pipeline for pan-genome visulization and exploration
http://pangenome.de
GNU General Public License v3.0
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Roary output visualization using panX #50

Open leabact opened 2 years ago

leabact commented 2 years ago

Hello, I can't get to visualize my Roary results with panX. Using the link-to-server.py scrpit, i tried giving it my roary results directory (as -s) and the absolute path to the visualization (among multiple other tries). My issue is always the same : Roary output doesn't have the vis directory needed for visualization. I tried creating it but i don't have the same files to put in it (tried looking at what is supposed to be in the vis file). I must have forgot something as it's specified that we can use roary output into panX visualization tool. Can someone help?