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neherlab / pan-genome-analysis

Processing pipeline for pan-genome visulization and exploration
http://pangenome.de
GNU General Public License v3.0
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Failed to export myPangenome's geneCluster.json (step 10) #51

Open jhcuarta opened 2 years ago

jhcuarta commented 2 years ago

Hi I encounter an error while running the next command line ./panX.py -fn ./data/Vibrio_complete -sl Vibrio_complete -dmdc -t 1 > Vibrio_complete.log

The error follows as

Traceback (most recent call last): File "./panX.py", line 322, in myPangenome.export_geneCluster_json() File "/home/jason/Documents/pan-genome-analysis/scripts/pangenome_computation.py", line 225, in export_geneCluster_json geneCluster_to_json(self.path, self.enable_RNA_clustering, self.store_locus_tag, self.raw_locus_tag, self.optional_table_column) File "/home/jason/Documents/pan-genome-analysis/scripts/sf_geneCluster_json.py", line 171, in geneCluster_to_json '"divers":"'+gene_diversity_Dt[clusterID]+'"', KeyError: 'GC00002056'