Hi.
I am testing panX in my laptop. I already had miniconda3 installed so I tried the py3 branch, after failing to install the main branch and reading #27 . It seems to install properly but I got an error message running the test set:
mv: cannot stat 'GC00000143_2_aa_aln.fa': No such file or directory mv: cannot stat 'GC00000143_2_na_aln.fa': No such file or directory mv: cannot stat 'GC00000143_1_aa_aln.fa': No such file or directory mv: cannot stat 'GC00000143_1_na_aln.fa': No such file or directory Traceback (most recent call last): File "/.../pan-genome-analysis/./panX.py", line 312, in <module> myPangenome.infer_gene_gain_loss_pattern() File "/.../pan-genome-analysis/pan-genome-analysis/scripts/pangenome_computation.py", line 214, in infer_gene_gain_loss_pattern process_gain_loss(self.path, self.merged_gain_loss_output) File "/.../pan-genome-analysis/pan-genome-analysis/scripts/sf_gain_loss.py", line 104, in process_gain_loss set_seq_to_patternseq(tree) File "/.../pan-genome-analysis/pan-genome-analysis/scripts/sf_gain_loss.py", line 393, in set_seq_to_patternseq node.sequence = node.patternseq AttributeError: can't set attribute
Any clue why this happened. Is it that I tried to install the main branch first?
Hi. I am testing panX in my laptop. I already had miniconda3 installed so I tried the py3 branch, after failing to install the main branch and reading #27 . It seems to install properly but I got an error message running the test set:
mv: cannot stat 'GC00000143_2_aa_aln.fa': No such file or directory mv: cannot stat 'GC00000143_2_na_aln.fa': No such file or directory mv: cannot stat 'GC00000143_1_aa_aln.fa': No such file or directory mv: cannot stat 'GC00000143_1_na_aln.fa': No such file or directory Traceback (most recent call last): File "/.../pan-genome-analysis/./panX.py", line 312, in <module> myPangenome.infer_gene_gain_loss_pattern() File "/.../pan-genome-analysis/pan-genome-analysis/scripts/pangenome_computation.py", line 214, in infer_gene_gain_loss_pattern process_gain_loss(self.path, self.merged_gain_loss_output) File "/.../pan-genome-analysis/pan-genome-analysis/scripts/sf_gain_loss.py", line 104, in process_gain_loss set_seq_to_patternseq(tree) File "/.../pan-genome-analysis/pan-genome-analysis/scripts/sf_gain_loss.py", line 393, in set_seq_to_patternseq node.sequence = node.patternseq AttributeError: can't set attributeAny clue why this happened. Is it that I tried to install the main branch first?