The docker image has the size of ~1.5Gb and takes ~30 mins to compile. Half of this size is due to the fact that we use the ete3 python library, and we need to package a python distribution with conda in the docker image.
This only gets used in the export command, and in particular for the PanX-compatible export (file src/panX.jl).
A possible solution to reduce compilation time and docker image size is to use TreeTools instead of ete3. In particular we need functions to:
import a tree from a newick file, and export a tree to newick format
The docker image has the size of ~1.5Gb and takes ~30 mins to compile. Half of this size is due to the fact that we use the
ete3python library, and we need to package a python distribution withcondain the docker image. This only gets used in theexportcommand, and in particular for the PanX-compatible export (filesrc/panX.jl).A possible solution to reduce compilation time and docker image size is to use TreeTools instead of
ete3. In particular we need functions to: