neherlab / pangraph

A bioinformatic toolkit to align genome assemblies into pangenome graphs
https://neherlab.github.io/pangraph
MIT License
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Fix/issue 62 #63

Closed mmolari closed 8 months ago

mmolari commented 8 months ago

This branch contains a bug-fix for the alignment merging. In some edge cases of adjacent insertion and deletion segment, insertions within these segments would be accounted twice. This is fixed by removing the insertions once accounted for.