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neherlab
/
pangraph
A bioinformatic toolkit to align genome assemblies into pangenome graphs
https://neherlab.github.io/pangraph
MIT License
87
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7
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Add --version argument
#39
ivan-aksamentov
closed
1 year ago
0
Automate release routine
#38
ivan-aksamentov
closed
1 year ago
0
add fasttree to docker
#37
mmolari
closed
1 year ago
0
chore(ci): deploy docs from git tags
#36
ivan-aksamentov
closed
1 year ago
0
chore(ci): build and deploy docs automatically
#35
ivan-aksamentov
closed
1 year ago
0
chore(ci): release container image when master branch is updated
#34
ivan-aksamentov
closed
1 year ago
0
Feat/finalize paper
#33
mmolari
closed
1 year ago
0
Bypassing ordering step
#32
sumit-walia
opened
2 years ago
4
Dockerfile/pangraph not building
#31
schorlton
opened
2 years ago
1
Sequence divergence of input genomes
#30
majunyeong
opened
2 years ago
1
Can I use pangraph for MAGs?
#29
SilasK
opened
2 years ago
3
GFA export bug fixes
#28
nnoll
closed
2 years ago
0
chore: add docker container
#27
ivan-aksamentov
closed
2 years ago
4
GFA export edge case
#26
liampshaw
closed
2 years ago
1
feat: errors are emitted from asyncronous tasks
#25
mmolari
closed
2 years ago
2
feat: prototype architecture for wfmash
#24
nnoll
closed
1 year ago
1
The process gets into sleep status without reporting
#23
HaimAshk
closed
2 years ago
6
installation issue
#22
khodor14
closed
2 years ago
3
feat: validate sequence
#21
nnoll
opened
2 years ago
0
fix: deal with zero length blocks getting added to segment
#20
nnoll
closed
2 years ago
0
fix: error with gfa export of fully duplicated paths
#19
mmolari
closed
2 years ago
0
Problems installing..
#18
samlipworth
closed
2 years ago
6
GFAv1 output
#17
ekg
opened
2 years ago
2
Tutorials
#16
nnoll
closed
2 years ago
0
Feat/minimap2 jll
#15
nnoll
closed
3 years ago
0
chore: removed python
#14
nnoll
closed
3 years ago
0
Feat/output intervals
#13
nnoll
closed
3 years ago
0
Enable parallelism. Use minimap2 as a library. Performance enhancements
#12
nnoll
closed
3 years ago
0
Fix/block bookkeeping
#11
nnoll
closed
3 years ago
0
Fix: false high diversity blocks
#10
nnoll
closed
3 years ago
0
Fix/clobbering insertions
#9
nnoll
closed
3 years ago
0
Major refactor: v2
#8
nnoll
closed
3 years ago
0
Update suffix tree pairwise distance computation
#7
nnoll
closed
3 years ago
0
Allow for linear (non-circular) genome topologies
#6
nnoll
closed
4 years ago
0
feat/fasta parser
#5
nnoll
closed
4 years ago
0
Fuzzy matching of anchors
#4
nnoll
closed
4 years ago
0
Track repeated junctions to merge transitives
#3
nnoll
closed
4 years ago
0
Feature: separate sequence path from underlying graph logic
#2
nnoll
closed
4 years ago
0
Seperate logic of individual sequences and the underlying graph
#1
nnoll
closed
4 years ago
0
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