I got this error from refine that I struggled to debug:
ERROR: SequenceData: loading alignment failed... builds/masked.fasta
ERROR from TreeTime: This error is most likely due to a problem with your input data.
Please check your input data and try again. If you continue to have problems, please open a new issue including
the original command and the error above: <https://github.com/nextstrain/augur/issues/new/choose>
I didn't know why the alignment couldn't be loaded.
Turns out, my sequences weren't aligned, they had different lengths.
Would be good to report a bit more granular detail from what goes wrong in the alignment loading.
I got this error from refine that I struggled to debug:
I didn't know why the alignment couldn't be loaded.
Turns out, my sequences weren't aligned, they had different lengths.
Would be good to report a bit more granular detail from what goes wrong in the alignment loading.