search

neherlab / treetime_examples

A collection of documented examples using TreeTime
14 stars 15 forks source link

treetime mugration #2

Closed antoine4ucsd closed 5 years ago

antoine4ucsd commented 5 years ago

Hi Richard, Dear colleagues, I am using the treetime mugration tool and it works fine for most of my data but I am having this kind of error message on my latest dataset I wonder if there is a limit in the number of country/location/trait ?? I cannot find any special character that make it crashed. I can share data in private message if you want to take a look

Traceback (most recent call last): File "~//anaconda2/bin/treetime", line 273, in <module> return_code = params.func(params) File "~//anaconda2/lib/python2.7/site-packages/treetime/wrappers.py", line 718, in mugration fixed_pi=weights if params.weights else None) File "~//anaconda2/lib/python2.7/site-packages/treetime/treeanc.py", line 889, in infer_ancestral_sequences return self.reconstruct_anc(*args,**kwargs) File "~//anaconda2/lib/python2.7/site-packages/treetime/treeanc.py", line 931, in reconstruct_anc tmp = self.infer_gtr(marginal=marginal, **kwargs) File "~//anaconda2/lib/python2.7/site-packages/treetime/treeanc.py", line 849, in infer_gtr _ml_anc(final=True, **kwargs) # call one of the reconstruction types File "~//anaconda2/lib/python2.7/site-packages/treetime/treeanc.py", line 1381, in _ml_anc_marginal self.tree.root.sequence = self.expanded_sequence(self.tree.root) File "~//anaconda2/lib/python2.7/site-packages/treetime/treeanc.py", line 1053, in expanded_sequence seq[full_pos[full_pos<L]] = state UnicodeDecodeError: 'ascii' codec can't decode byte 0x87 in position 0: ordinal not in range(128)

thanks!

rneher commented 5 years ago

yes, this might be an issue with too many places. It is limited to 180, but it looks as if there might be problems even with smaller numbers. If you send me your data, I'll test and see what needs fixing. thanks!

antoine4ucsd commented 5 years ago

Hi Richard! I hope you are doing well. thanks for your quick reply in the attached files, you will find a tree and 2 annotations files (the ‘continent’ is working but not the ‘country’) ALSO, I’ve identifed clades of interest in the taxon names with a suffix ‘CLUSTERxxSIZExx_’ Is there a way (R code??) to extract the location ancestor for a list of defined clades?

thanks, a

Antoine Chaillon M.D., Ph.D. Center For Aids Research (CFAR) Division of Infectious Diseases, UCSD & VA San Diego Healthcare System Stein Clinical Research Building #325 University of California San Diego 9500 Gilman Drive La Jolla CA, 92093-0679 (+33) 76-779-4224

On Jan 26, 2019, at 1:15 AM, Richard Neher <notifications@github.com mailto:notifications@github.com> wrote:

yes, this might be an issue with too many places. It is limited to 180, but it looks as if there might be problems even with smaller numbers. If you send me your data, I'll test and see what needs fixing. thanks!

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/neherlab/treetime_examples/issues/2#issuecomment-457815909, or mute the thread https://github.com/notifications/unsubscribe-auth/ARpT52xFQxytzZ93wnIb_9G1ggQB1Rveks5vHBy1gaJpZM4aTrSr.

name,continent

EUR-Albania_AY611666_Unknown,eur EUR-Albania_AY611667_Unknown,eur EUR-Albania_AY611668_Unknown,eur EUR-Albania_AY611669_Unknown,eur EUR-Albania_AY611670_Unknown,eur EUR-Albania_AY611672_Unknown,eur EUR-Albania_AY611673_Unknown,eur EUR-Albania_AY611674_Unknown,eur EUR-Albania_AY611675_Unknown,eur EUR-Albania_AY611676_Unknown,eur EUR-Albania_AY611677_Unknown,eur EUR-Albania_AY611678_Unknown,eur EUR-Albania_AY611679_Unknown,eur EUR-Albania_AY611680_Unknown,eur EUR-Albania_AY611681_Unknown,eur EUR-Albania_AY611682_Unknown,eur EUR-Albania_AY611683_Unknown,eur EUR-Albania_AY611684_Unknown,eur EUR-Albania_AY611685_Unknown,eur EUR-Albania_AY611686_Unknown,eur EUR-Albania_AY611687_Unknown,eur EUR-Albania_AY611688_Unknown,eur EUR-Albania_AY611708_Unknown,eur FUS-Armenia_KF720955_2009,fus SAM-Argentina_AF456581_Unknown,sam SAM-Argentina_AF456612_Unknown,sam SAM-Argentina_AF456613_Unknown,sam SAM-Argentina_AF456614_Unknown,sam SAM-Argentina_AF456615_Unknown,sam SAM-Argentina_AF456616_Unknown,sam SAM-Argentina_AF456617_Unknown,sam SAM-Argentina_AF456618_Unknown,sam SAM-Argentina_AF456619_Unknown,sam SAM-Argentina_AF456620_Unknown,sam SAM-Argentina_AF456621_Unknown,sam SAM-Argentina_AF456622_Unknown,sam SAM-Argentina_AF456623_Unknown,sam SAM-Argentina_AF456624_Unknown,sam SAM-Argentina_AF456625_Unknown,sam SAM-Argentina_AF456626_Unknown,sam SAM-Argentina_AF456627_Unknown,sam SAM-Argentina_AF456628_Unknown,sam SAM-Argentina_AF456629_Unknown,sam SAM-Argentina_AF456630_Unknown,sam SAM-Argentina_AF456631_Unknown,sam SAM-Argentina_AF456632_Unknown,sam SAM-Argentina_AF456633_Unknown,sam SAM-Argentina_AF456634_Unknown,sam SAM-Argentina_AF456635_Unknown,sam SAM-Argentina_AF456636_Unknown,sam SAM-Argentina_AF456637_Unknown,sam SAM-Argentina_AF456638_Unknown,sam SAM-Argentina_AF456639_Unknown,sam SAM-Argentina_AF456640_Unknown,sam SAM-Argentina_AF456641_Unknown,sam SAM-Argentina_AF456642_Unknown,sam SAM-Argentina_AF456643_Unknown,sam SAM-Argentina_AF456644_Unknown,sam SAM-Argentina_AF456645_Unknown,sam SAM-Argentina_AF456646_Unknown,sam SAM-Argentina_AF456647_Unknown,sam SAM-Argentina_AF456648_Unknown,sam SAM-Argentina_AF456649_Unknown,sam SAM-Argentina_AF456650_Unknown,sam SAM-Argentina_AF456651_Unknown,sam SAM-Argentina_AF456652_Unknown,sam SAM-Argentina_AF456653_Unknown,sam SAM-Argentina_AF456654_Unknown,sam SAM-Argentina_AF456655_Unknown,sam SAM-Argentina_AF456656_Unknown,sam SAM-Argentina_AF456657_Unknown,sam SAM-Argentina_AF456658_Unknown,sam SAM-Argentina_AF456659_Unknown,sam SAM-Argentina_AF456660_Unknown,sam SAM-Argentina_AF456661_Unknown,sam SAM-Argentina_AF456662_Unknown,sam SAM-Argentina_AF456663_Unknown,sam SAM-Argentina_AF456664_Unknown,sam SAM-Argentina_AF456665_Unknown,sam SAM-Argentina_AF456666_Unknown,sam SAM-Argentina_AF456667_Unknown,sam SAM-Argentina_AF456668_Unknown,sam SAM-Argentina_AF456669_Unknown,sam SAM-Argentina_AF456670_Unknown,sam SAM-Argentina_AF456671_Unknown,sam SAM-Argentina_AF456672_Unknown,sam SAM-Argentina_AF456673_Unknown,sam SAM-Argentina_AF456674_Unknown,sam SAM-Argentina_AF456675_Unknown,sam SAM-Argentina_AF456676_Unknown,sam SAM-Argentina_AF456677_Unknown,sam SAM-Argentina_AF456678_Unknown,sam SAM-Argentina_AF456679_Unknown,sam SAM-Argentina_AF456680_Unknown,sam SAM-Argentina_AF456681_Unknown,sam SAM-Argentina_AF456682_Unknown,sam SAM-Argentina_AF456683_Unknown,sam SAM-Argentina_AF456684_Unknown,sam SAM-Argentina_AF456685_Unknown,sam SAM-Argentina_AF456686_Unknown,sam SAM-Argentina_AF456687_Unknown,sam SAM-Argentina_AF456688_Unknown,sam SAM-Argentina_AF456689_Unknown,sam SAM-Argentina_AF456690_Unknown,sam SAM-Argentina_AF456691_Unknown,sam SAM-Argentina_AF456692_Unknown,sam SAM-Argentina_AF456693_Unknown,sam SAM-Argentina_AF456694_Unknown,sam SAM-Argentina_AF456695_Unknown,sam SAM-Argentina_AF456696_Unknown,sam SAM-Argentina_AF456697_Unknown,sam SAM-Argentina_AF456698_Unknown,sam SAM-Argentina_AF456699_Unknown,sam SAM-Argentina_AF456700_Unknown,sam SAM-Argentina_AF456701_Unknown,sam SAM-Argentina_AF456702_Unknown,sam SAM-Argentina_AF456703_Unknown,sam SAM-Argentina_AF456704_Unknown,sam SAM-Argentina_AF456705_Unknown,sam SAM-Argentina_AF456706_Unknown,sam SAM-Argentina_AF456707_Unknown,sam SAM-Argentina_AF456708_Unknown,sam SAM-Argentina_AF456709_Unknown,sam SAM-Argentina_AF456710_Unknown,sam SAM-Argentina_AF456711_Unknown,sam SAM-Argentina_AF456712_Unknown,sam SAM-Argentina_AF456713_Unknown,sam SAM-Argentina_AF456714_Unknown,sam SAM-Argentina_AF456715_Unknown,sam SAM-Argentina_AF456716_Unknown,sam SAM-Argentina_AF456717_Unknown,sam SAM-Argentina_AF456718_Unknown,sam SAM-Argentina_AF456719_Unknown,sam SAM-Argentina_AF456720_Unknown,sam SAM-Argentina_AF456721_Unknown,sam SAM-Argentina_AF456722_Unknown,sam SAM-Argentina_AF456723_Unknown,sam SAM-Argentina_AF456726_Unknown,sam SAM-Argentina_AF456727_Unknown,sam SAM-Argentina_AF456732_Unknown,sam SAM-Argentina_AF456734_Unknown,sam SAM-Argentina_AF456749_Unknown,sam SAM-Argentina_AF456750_Unknown,sam SAM-Argentina_AF456751_Unknown,sam SAM-Argentina_AF456752_Unknown,sam SAM-Argentina_AF456753_Unknown,sam SAM-Argentina_AF456754_Unknown,sam SAM-Argentina_AF456755_Unknown,sam SAM-Argentina_AF456757_Unknown,sam SAM-Argentina_AF456758_Unknown,sam SAM-Argentina_AF456759_Unknown,sam SAM-Argentina_AF456760_Unknown,sam SAM-Argentina_AF456762_Unknown,sam SAM-Argentina_AF456763_Unknown,sam SAM-Argentina_AF456764_Unknown,sam SAM-Argentina_AY037268_1998,sam SAM-Argentina_AY037269_2000,sam SAM-Argentina_AY037282_1999,sam SAM-Argentina_AY211624_Unknown,sam SAM-Argentina_AY211625_Unknown,sam SAM-Argentina_AY211626_Unknown,sam SAM-Argentina_AY211649_Unknown,sam SAM-Argentina_AY211650_Unknown,sam SAM-Argentina_AY211651_Unknown,sam SAM-Argentina_AY211652_Unknown,sam SAM-Argentina_AY211653_Unknown,sam SAM-Argentina_AY211654_Unknown,sam SAM-Argentina_AY211655_Unknown,sam SAM-Argentina_AY211656_Unknown,sam SAM-Argentina_AY365470_2001,sam SAM-Argentina_AY365472_2001,sam SAM-Argentina_AY365474_2001,sam SAM-Argentina_AY365477_2001,sam SAM-Argentina_AY365479_2001,sam SAM-Argentina_AY365482_2001,sam SAM-Argentina_AY365486_2001,sam SAM-Argentina_AY365495_2001,sam SAM-Argentina_AY365496_2001,sam SAM-Argentina_AY365497_2001,sam SAM-Argentina_AY365502_2001,sam SAM-Argentina_AY365505_2001,sam SAM-Argentina_AY365507_2001,sam SAM-Argentina_AY365508_2001,sam SAM-Argentina_AY365510_2001,sam SAM-Argentina_AY365513_2001,sam SAM-Argentina_AY365515_2001,sam SAM-Argentina_AY365517_2001,sam SAM-Argentina_AY365518_2001,sam SAM-Argentina_AY365519_2001,sam SAM-Argentina_AY365520_2001,sam SAM-Argentina_AY365521_2001,sam SAM-Argentina_AY365522_2001,sam SAM-Argentina_AY365525_2001,sam SAM-Argentina_AY365526_2001,sam SAM-Argentina_AY365529_2001,sam SAM-Argentina_AY365530_2001,sam SAM-Argentina_AY365531_2001,sam SAM-Argentina_AY365532_2001,sam SAM-Argentina_AY365533_2001,sam SAM-Argentina_AY365534_2001,sam SAM-Argentina_AY365535_2001,sam SAM-Argentina_AY365540_2001,sam SAM-Argentina_AY365543_2001,sam SAM-Argentina_AY365544_2001,sam SAM-Argentina_AY365547_2001,sam SAM-Argentina_AY365550_2001,sam SAM-Argentina_AY365552_2001,sam SAM-Argentina_AY365555_2001,sam SAM-Argentina_AY365556_2001,sam SAM-Argentina_AY365557_2001,sam SAM-Argentina_AY365559_2001,sam SAM-Argentina_AY365560_2001,sam SAM-Argentina_AY365561_2001,sam SAM-Argentina_AY365562_2001,sam SAM-Argentina_AY365564_2001,sam SAM-Argentina_AY365565_2001,sam SAM-Argentina_AY365567_2001,sam SAM-Argentina_AY365568_2001,sam SAM-Argentina_AY365569_2001,sam SAM-Argentina_AY365572_2001,sam SAM-Argentina_AY365573_2001,sam SAM-Argentina_AY365574_2001,sam SAM-Argentina_AY365576_2001,sam SAM-Argentina_AY365577_2001,sam SAM-Argentina_AY365579_2001,sam SAM-Argentina_AY365580_2001,sam SAM-Argentina_AY365581_2001,sam SAM-Argentina_AY365582_2001,sam SAM-Argentina_AY365585_2001,sam SAM-Argentina_AY365587_2001,sam SAM-Argentina_AY365589_2001,sam SAM-Argentina_AY365590_2001,sam SAM-Argentina_AY365594_2001,sam SAM-Argentina_AY365595_2001,sam SAM-Argentina_AY365596_2001,sam SAM-Argentina_AY365597_2001,sam SAM-Argentina_AY365598_2001,sam SAM-Argentina_AY365599_2001,sam SAM-Argentina_AY365601_2001,sam SAM-Argentina_AY365602_2001,sam SAM-Argentina_AY365603_2001,sam SAM-Argentina_AY365605_2001,sam SAM-Argentina_AY365606_2001,sam SAM-Argentina_AY365607_2001,sam SAM-Argentina_AY365608_2001,sam SAM-Argentina_AY365610_2001,sam SAM-Argentina_AY365611_2001,sam SAM-Argentina_AY365612_2001,sam SAM-Argentina_AY365614_2001,sam SAM-Argentina_AY365615_2001,sam SAM-Argentina_AY365616_2001,sam SAM-Argentina_AY365617_2001,sam SAM-Argentina_AY365618_2001,sam SAM-Argentina_AY365621_2001,sam SAM-Argentina_AY365624_2001,sam SAM-Argentina_AY365626_2001,sam SAM-Argentina_AY365631_2001,sam SAM-Argentina_AY365633_2001,sam SAM-Argentina_AY365634_2001,sam SAM-Argentina_AY365635_2001,sam SAM-Argentina_AY365636_2001,sam SAM-Argentina_AY365637_2001,sam SAM-Argentina_AY365642_2001,sam SAM-Argentina_AY365644_2001,sam SAM-Argentina_AY365646_2001,sam SAM-Argentina_AY365647_2001,sam SAM-Argentina_AY365648_2001,sam SAM-Argentina_AY365650_2001,sam SAM-Argentina_AY365651_2001,sam SAM-Argentina_AY365652_2001,sam SAM-Argentina_AY365654_2001,sam SAM-Argentina_AY365656_2001,sam SAM-Argentina_AY365657_2001,sam SAM-Argentina_AY365659_2001,sam SAM-Argentina_AY365662_2001,sam SAM-Argentina_AY365666_2001,sam SAM-Argentina_AY365667_2001,sam SAM-Argentina_AY365668_2001,sam SAM-Argentina_AY365674_2001,sam SAM-Argentina_AY365679_2001,sam SAM-Argentina_AY365680_2001,sam SAM-Argentina_AY365685_2001,sam SAM-Argentina_AY365688_2001,sam SAM-Argentina_AY365689_2001,sam SAM-Argentina_AY365690_2001,sam SAM-Argentina_AY365691_2001,sam SAM-Argentina_AY365693_2001,sam SAM-Argentina_AY365695_2001,sam SAM-Argentina_AY365696_2001,sam SAM-Argentina_AY365702_2001,sam SAM-Argentina_AY365704_2001,sam SAM-Argentina_AY365705_2001,sam SAM-Argentina_AY365708_2001,sam SAM-Argentina_AY365709_2001,sam SAM-Argentina_AY365710_2001,sam SAM-Argentina_AY365713_2001,sam SAM-Argentina_AY365717_2001,sam SAM-Argentina_AY365718_2001,sam SAM-Argentina_AY365722_2001,sam SAM-Argentina_AY365726_2001,sam SAM-Argentina_AY365730_2001,sam SAM-Argentina_AY365731_2001,sam SAM-Argentina_AY365733_2001,sam SAM-Argentina_AY365735_2001,sam SAM-Argentina_AY365737_2001,sam SAM-Argentina_AY365739_2001,sam SAM-Argentina_AY365747_2001,sam SAM-Argentina_AY365749_2001,sam SAM-Argentina_AY365750_2001,sam SAM-Argentina_AY365752_2001,sam SAM-Argentina_AY365753_2001,sam SAM-Argentina_AY365755_2001,sam SAM-Argentina_AY365757_2001,sam SAM-Argentina_AY365764_2001,sam SAM-Argentina_AY365765_2001,sam SAM-Argentina_AY365766_2001,sam SAM-Argentina_AY365769_2001,sam SAM-Argentina_AY365771_2001,sam SAM-Argentina_AY365772_2001,sam SAM-Argentina_AY365773_2001,sam SAM-Argentina_AY365776_2001,sam SAM-Argentina_AY365779_2001,sam SAM-Argentina_AY365780_2001,sam SAM-Argentina_AY365781_2001,sam SAM-Argentina_AY365782_2001,sam SAM-Argentina_AY365784_2001,sam SAM-Argentina_AY365785_2001,sam SAM-Argentina_AY365788_2001,sam SAM-Argentina_AY365791_2001,sam SAM-Argentina_AY365792_2001,sam SAM-Argentina_AY365793_2001,sam SAM-Argentina_AY365794_2001,sam SAM-Argentina_AY365795_2001,sam SAM-Argentina_AY365797_2001,sam SAM-Argentina_AY365798_2001,sam SAM-Argentina_AY365799_2001,sam SAM-Argentina_AY365807_2001,sam SAM-Argentina_AY365808_2001,sam SAM-Argentina_AY365814_2001,sam SAM-Argentina_AY365815_2001,sam SAM-Argentina_AY365816_2001,sam SAM-Argentina_AY365817_2001,sam SAM-Argentina_AY365821_2001,sam SAM-Argentina_AY365822_2001,sam SAM-Argentina_AY365825_2001,sam SAM-Argentina_AY365830_2001,sam SAM-Argentina_AY365831_2001,sam SAM-Argentina_AY365842_2001,sam SAM-Argentina_AY365843_2001,sam SAM-Argentina_AY365844_2001,sam SAM-Argentina_AY365845_2001,sam SAM-Argentina_AY365846_2001,sam SAM-Argentina_AY365847_2001,sam SAM-Argentina_AY365848_2001,sam SAM-Argentina_AY365849_2001,sam SAM-Argentina_AY365853_2001,sam SAM-Argentina_AY365855_2001,sam SAM-Argentina_AY365858_2001,sam SAM-Argentina_AY365860_2001,sam SAM-Argentina_AY365863_2001,sam SAM-Argentina_AY365866_2001,sam SAM-Argentina_AY365867_2001,sam SAM-Argentina_AY365868_2001,sam SAM-Argentina_AY365869_2001,sam SAM-Argentina_AY365870_2001,sam SAM-Argentina_AY365872_2001,sam SAM-Argentina_AY365873_2001,sam SAM-Argentina_AY365874_2001,sam SAM-Argentina_AY365876_2001,sam SAM-Argentina_AY365877_2001,sam SAM-Argentina_AY365878_2001,sam SAM-Argentina_AY365879_2001,sam SAM-Argentina_AY365882_2001,sam SAM-Argentina_AY365883_2001,sam SAM-Argentina_AY365886_2001,sam SAM-Argentina_AY365887_2001,sam SAM-Argentina_AY365888_2001,sam SAM-Argentina_AY365889_2001,sam SAM-Argentina_AY365890_2001,sam SAM-Argentina_AY365892_2001,sam SAM-Argentina_AY365893_2001,sam SAM-Argentina_AY365894_2001,sam SAM-Argentina_AY365897_2001,sam SAM-Argentina_AY365898_2001,sam SAM-Argentina_AY365899_2001,sam SAM-Argentina_AY365901_2001,sam SAM-Argentina_AY365902_2001,sam SAM-Argentina_AY365903_2001,sam SAM-Argentina_AY365904_2001,sam SAM-Argentina_AY365907_2001,sam SAM-Argentina_AY365908_2001,sam SAM-Argentina_AY365910_2001,sam SAM-Argentina_AY365911_2001,sam SAM-Argentina_AY365915_2001,sam SAM-Argentina_AY365918_2001,sam SAM-Argentina_AY365919_2001,sam SAM-Argentina_AY365920_2001,sam SAM-Argentina_AY365921_2001,sam SAM-Argentina_AY365922_2001,sam SAM-Argentina_AY365923_2001,sam SAM-Argentina_AY365929_2001,sam SAM-Argentina_AY365930_2001,sam SAM-Argentina_AY365932_2001,sam SAM-Argentina_AY365938_2001,sam SAM-Argentina_AY365940_2001,sam SAM-Argentina_AY365941_2001,sam SAM-Argentina_AY365943_2001,sam SAM-Argentina_AY365945_2001,sam SAM-Argentina_AY365946_2001,sam SAM-Argentina_AY365948_2001,sam SAM-Argentina_AY365950_2001,sam SAM-Argentina_AY365951_2001,sam SAM-Argentina_AY365954_2001,sam SAM-Argentina_AY365955_2001,sam SAM-Argentina_AY365956_2001,sam SAM-Argentina_AY365957_2001,sam SAM-Argentina_AY365962_2001,sam SAM-Argentina_AY365964_2001,sam SAM-Argentina_AY365970_2001,sam SAM-Argentina_AY365971_2001,sam SAM-Argentina_AY365972_2001,sam SAM-Argentina_AY365973_2001,sam SAM-Argentina_AY365975_2001,sam SAM-Argentina_AY365979_2001,sam SAM-Argentina_AY365980_2001,sam SAM-Argentina_AY365982_2001,sam SAM-Argentina_AY365984_2001,sam SAM-Argentina_AY365985_2001,sam SAM-Argentina_AY365986_2001,sam SAM-Argentina_AY365989_2001,sam SAM-Argentina_AY365995_2001,sam SAM-Argentina_AY365996_2001,sam SAM-Argentina_AY365997_2001,sam SAM-Argentina_AY365998_2001,sam SAM-Argentina_AY365999_2001,sam SAM-Argentina_AY366002_2001,sam SAM-Argentina_AY366004_2001,sam SAM-Argentina_AY366008_2001,sam SAM-Argentina_AY366010_2001,sam SAM-Argentina_AY366011_2001,sam SAM-Argentina_AY366016_2001,sam SAM-Argentina_AY366017_2001,sam SAM-Argentina_AY366024_2001,sam SAM-Argentina_AY366025_2001,sam SAM-Argentina_AY366026_2001,sam SAM-Argentina_AY366029_2001,sam SAM-Argentina_AY366035_2001,sam SAM-Argentina_AY366036_2001,sam SAM-Argentina_AY366037_2001,sam SAM-Argentina_AY366038_2001,sam SAM-Argentina_AY366039_2001,sam SAM-Argentina_AY366042_2001,sam SAM-Argentina_AY366043_2001,sam SAM-Argentina_AY366044_2001,sam SAM-Argentina_AY366045_2001,sam SAM-Argentina_AY366046_2001,sam SAM-Argentina_AY366049_2001,sam SAM-Argentina_AY366051_2001,sam SAM-Argentina_AY366054_2001,sam SAM-Argentina_AY366055_2001,sam SAM-Argentina_AY493358_Unknown,sam SAM-Argentina_AY493359_Unknown,sam SAM-Argentina_AY493360_Unknown,sam SAM-Argentina_AY493363_Unknown,sam SAM-Argentina_AY493364_Unknown,sam SAM-Argentina_AY493366_Unknown,sam SAM-Argentina_AY493367_Unknown,sam SAM-Argentina_AY493368_Unknown,sam SAM-Argentina_AY493371_Unknown,sam SAM-Argentina_DQ206664_2004,sam SAM-Argentina_DQ206665_2004,sam SAM-Argentina_DQ206666_2004,sam SAM-Argentina_DQ206667_2004,sam SAM-Argentina_DQ206668_2004,sam SAM-Argentina_DQ206669_2004,sam SAM-Argentina_DQ206670_2004,sam SAM-Argentina_DQ206671_2004,sam SAM-Argentina_DQ206672_2004,sam SAM-Argentina_DQ206673_2004,sam SAM-Argentina_DQ206674_2004,sam SAM-Argentina_DQ345506_2004,sam SAM-Argentina_DQ345507_2004,sam SAM-Argentina_DQ345508_2004,sam SAM-Argentina_DQ345509_2004,sam SAM-Argentina_DQ345510_2004,sam SAM-Argentina_DQ345511_2004,sam SAM-Argentina_DQ345512_2004,sam SAM-Argentina_DQ345513_2004,sam SAM-Argentina_DQ345514_2004,sam SAM-Argentina_DQ345515_2004,sam SAM-Argentina_DQ383746_2002,sam SAM-Argentina_DQ383748_2003,sam SAM-Argentina_DQ383749_2003,sam SAM-Argentina_DQ383751_2004,sam SAM-Argentina_DQ383752_2004,sam SAM-Argentina_DQ518496_2004,sam SAM-Argentina_DQ518498_2004,sam SAM-Argentina_DQ518500_2004,sam SAM-Argentina_DQ518502_2004,sam SAM-Argentina_DQ518512_2004,sam SAM-Argentina_DQ518514_2004,sam SAM-Argentina_DQ877743_2004,sam SAM-Argentina_DQ995539_Unknown,sam SAM-Argentina_DQ995548_Unknown,sam SAM-Argentina_DQ995550_Unknown,sam SAM-Argentina_DQ995551_Unknown,sam SAM-Argentina_DQ995553_Unknown,sam SAM-Argentina_DQ995555_Unknown,sam SAM-Argentina_DQ995557_Unknown,sam SAM-Argentina_DQ995569_Unknown,sam SAM-Argentina_DQ995570_Unknown,sam SAM-Argentina_DQ995579_Unknown,sam SAM-Argentina_DQ995583_Unknown,sam SAM-Argentina_DQ995586_Unknown,sam SAM-Argentina_DQ995587_Unknown,sam SAM-Argentina_DQ995588_Unknown,sam SAM-Argentina_EF120074_2003,sam SAM-Argentina_EF120075_2003,sam SAM-Argentina_EF120080_2003,sam SAM-Argentina_EF120084_2003,sam SAM-Argentina_EF120087_2003,sam SAM-Argentina_EF120088_2003,sam SAM-Argentina_EF120095_2003,sam SAM-Argentina_EF120097_2003,sam SAM-Argentina_EF120098_2003,sam SAM-Argentina_EF120102_2003,sam SAM-Argentina_EF120103_2003,sam SAM-Argentina_EF120105_2003,sam SAM-Argentina_EF120112_2004,sam SAM-Argentina_EF120115_2003,sam SAM-Argentina_EF120116_2003,sam SAM-Argentina_EF120124_2003,sam SAM-Argentina_EF120125_2003,sam SAM-Argentina_EF120126_2003,sam SAM-Argentina_EF120133_2003,sam SAM-Argentina_EF120135_2003,sam SAM-Argentina_EF120150_2003,sam SAM-Argentina_EF120153_2003,sam SAM-Argentina_EF120155_2003,sam SAM-Argentina_EF120157_2003,sam SAM-Argentina_EF120158_2003,sam SAM-Argentina_EF120162_2003,sam SAM-Argentina_EF120165_2003,sam SAM-Argentina_EF120168_2003,sam SAM-Argentina_EF120171_2003,sam SAM-Argentina_EF120175_2003,sam SAM-Argentina_EF120179_2003,sam SAM-Argentina_EF120181_2003,sam SAM-Argentina_EF120183_2003,sam SAM-Argentina_EF120184_2003,sam SAM-Argentina_EF120185_2003,sam SAM-Argentina_EF120186_2003,sam SAM-Argentina_EF120187_2003,sam SAM-Argentina_EF120190_2003,sam SAM-Argentina_EF120192_2003,sam SAM-Argentina_EF120194_2003,sam SAM-Argentina_EF120197_2003,sam SAM-Argentina_EF120200_2003,sam SAM-Argentina_EF120201_2003,sam SAM-Argentina_EF120202_2003,sam SAM-Argentina_EF120203_2003,sam SAM-Argentina_EF120206_2003,sam SAM-Argentina_EF120207_2003,sam SAM-Argentina_EF120209_2003,sam SAM-Argentina_EF120211_2003,sam SAM-Argentina_EF120212_2003,sam SAM-Argentina_EF120215_2003,sam SAM-Argentina_EF120219_2003,sam SAM-Argentina_EF120223_2003,sam SAM-Argentina_EF120226_2003,sam SAM-Argentina_EF120229_2003,sam SAM-Argentina_EF120230_2003,sam SAM-Argentina_EF120234_2003,sam SAM-Argentina_EF120237_2003,sam SAM-Argentina_EF120243_2003,sam SAM-Argentina_EF120245_2003,sam SAM-Argentina_EF120246_2003,sam SAM-Argentina_EF120247_2003,sam SAM-Argentina_EF120248_2003,sam SAM-Argentina_EF120249_2003,sam SAM-Argentina_EF120250_2003,sam SAM-Argentina_EF120259_2003,sam SAM-Argentina_EF120262_2003,sam SAM-Argentina_EF120263_2003,sam SAM-Argentina_EF120264_2003,sam SAM-Argentina_EF120265_2003,sam SAM-Argentina_EF120266_2003,sam SAM-Argentina_EF120267_2003,sam SAM-Argentina_EF120268_2003,sam SAM-Argentina_EF120269_2003,sam SAM-Argentina_EF120270_2003,sam SAM-Argentina_EF120271_2003,sam SAM-Argentina_EF120273_2003,sam SAM-Argentina_EF120274_2003,sam SAM-Argentina_EF120276_2003,sam SAM-Argentina_EF120277_2003,sam SAM-Argentina_EF120281_2003,sam SAM-Argentina_EF120282_2003,sam SAM-Argentina_EF120286_2003,sam SAM-Argentina_EF120287_2003,sam SAM-Argentina_EF120288_2003,sam SAM-Argentina_EF120289_2003,sam SAM-Argentina_EF120291_2003,sam SAM-Argentina_EF120294_2003,sam SAM-Argentina_EF120295_2003,sam SAM-Argentina_EF120296_2003,sam SAM-Argentina_EF120297_2003,sam SAM-Argentina_EF120298_2003,sam SAM-Argentina_EF120299_2003,sam SAM-Argentina_EF120302_2003,sam SAM-Argentina_EF120305_2003,sam SAM-Argentina_EF120306_2003,sam SAM-Argentina_EF120307_2003,sam SAM-Argentina_EF120310_2003,sam SAM-Argentina_EF120312_2003,sam SAM-Argentina_EF120314_2003,sam SAM-Argentina_EF120315_2003,sam SAM-Argentina_EF120316_2003,sam SAM-Argentina_EF120317_2003,sam SAM-Argentina_EF120318_2003,sam SAM-Argentina_EF120319_2003,sam SAM-Argentina_EF120320_2003,sam SAM-Argentina_EF120321_2003,sam SAM-Argentina_EF120322_2003,sam SAM-Argentina_EF120323_2003,sam SAM-Argentina_EF120324_2003,sam SAM-Argentina_EF120326_2003,sam SAM-Argentina_EF120329_2003,sam SAM-Argentina_EF120330_2003,sam SAM-Argentina_EF120331_2003,sam SAM-Argentina_EF120332_2003,sam SAM-Argentina_EF120333_2003,sam SAM-Argentina_EF120334_2003,sam SAM-Argentina_EF120335_2003,sam SAM-Argentina_EF120339_2004,sam SAM-Argentina_EF120341_2003,sam SAM-Argentina_EF120342_2003,sam SAM-Argentina_EF120345_2003,sam SAM-Argentina_EF120346_2003,sam SAM-Argentina_EF120347_2003,sam SAM-Argentina_EF120351_2003,sam SAM-Argentina_EF120354_2003,sam SAM-Argentina_EF120356_2003,sam SAM-Argentina_JN669432_2002,sam SAM-Argentina_JN669436_2003,sam SAM-Argentina_JN669441_2003,sam SAM-Argentina_JN669443_2003,sam SAM-Argentina_JN669445_2003,sam SAM-Argentina_JN669446_2003,sam SAM-Argentina_JN669448_2003,sam SAM-Argentina_JN669451_2003,sam SAM-Argentina_JN669453_2003,sam SAM-Argentina_JN669460_2003,sam SAM-Argentina_JN669461_2003,sam SAM-Argentina_JN669462_2003,sam SAM-Argentina_JN669463_2003,sam SAM-Argentina_JN669464_2003,sam SAM-Argentina_JN669465_2003,sam SAM-Argentina_JN669466_2003,sam SAM-Argentina_JN669467_2003,sam SAM-Argentina_JN669472_2003,sam SAM-Argentina_JN669475_2003,sam SAM-Argentina_JN669476_2003,sam SAM-Argentina_JN669477_2003,sam SAM-Argentina_JN669478_2003,sam SAM-Argentina_JN669479_2003,sam SAM-Argentina_JN669480_2003,sam SAM-Argentina_JN669481_2003,sam SAM-Argentina_JN669488_2003,sam SAM-Argentina_JN669489_2003,sam SAM-Argentina_JN669490_2003,sam SAM-Argentina_JN669491_2003,sam SAM-Argentina_JN669492_2003,sam SAM-Argentina_JN669495_2003,sam SAM-Argentina_JN669496_2003,sam SAM-Argentina_JN669497_2003,sam SAM-Argentina_JN669500_2003,sam SAM-Argentina_JN669502_2003,sam SAM-Argentina_JN669503_2003,sam SAM-Argentina_JN669505_2003,sam SAM-Argentina_JN669506_2003,sam SAM-Argentina_JN669509_2003,sam SAM-Argentina_JN669511_2003,sam SAM-Argentina_JN669512_2003,sam SAM-Argentina_JN669513_2003,sam SAM-Argentina_JN669514_2003,sam SAM-Argentina_JN669515_2003,sam SAM-Argentina_JN669518_2003,sam SAM-Argentina_JN669520_2003,sam SAM-Argentina_JN669521_2003,sam SAM-Argentina_JN669525_2003,sam SAM-Argentina_JN669528_2003,sam SAM-Argentina_JN669529_2003,sam SAM-Argentina_JN669530_2003,sam SAM-Argentina_JN669531_2003,sam SAM-Argentina_JN669534_2003,sam SAM-Argentina_JN669536_2003,sam SAM-Argentina_JN669539_2003,sam SAM-Argentina_JN669541_2003,sam SAM-Argentina_JN669542_2003,sam SAM-Argentina_JN669543_2003,sam SAM-Argentina_JN669544_2003,sam SAM-Argentina_JN669546_2003,sam SAM-Argentina_JN669547_2003,sam SAM-Argentina_JN669548_2003,sam SAM-Argentina_JN669549_2003,sam SAM-Argentina_JN669550_2003,sam SAM-Argentina_JN669551_2003,sam SAM-Argentina_JN669553_2003,sam SAM-Argentina_JN669554_2003,sam SAM-Argentina_JN669560_2003,sam SAM-Argentina_JN669564_2003,sam SAM-Argentina_JN669565_2003,sam SAM-Argentina_JN669566_2003,sam SAM-Argentina_JN669568_2003,sam SAM-Argentina_JN669569_2003,sam SAM-Argentina_JN669574_2003,sam SAM-Argentina_JN669575_2003,sam SAM-Argentina_JN669576_2003,sam SAM-Argentina_JN669577_2003,sam SAM-Argentina_JN669578_2003,sam SAM-Argentina_JN669581_2003,sam SAM-Argentina_JN669582_2003,sam SAM-Argentina_JN669584_2003,sam SAM-Argentina_JN669586_2003,sam SAM-Argentina_JN669588_2003,sam SAM-Argentina_JN669592_2003,sam SAM-Argentina_JN669593_2003,sam SAM-Argentina_JN669594_2003,sam SAM-Argentina_JN669595_2003,sam SAM-Argentina_JN669596_2003,sam SAM-Argentina_JN669597_2003,sam SAM-Argentina_JN669598_2003,sam SAM-Argentina_JN669600_2003,sam SAM-Argentina_JN669603_2003,sam SAM-Argentina_JN669604_2003,sam SAM-Argentina_JN669605_2003,sam SAM-Argentina_JN669606_2003,sam SAM-Argentina_JN669609_2003,sam SAM-Argentina_JN669610_2003,sam SAM-Argentina_JN669611_2003,sam SAM-Argentina_JN669612_2003,sam SAM-Argentina_JN669616_2004,sam SAM-Argentina_JN669617_2004,sam SAM-Argentina_JN669619_2004,sam SAM-Argentina_JN669621_2004,sam SAM-Argentina_JN669623_2004,sam SAM-Argentina_JN669624_2004,sam SAM-Argentina_JN669626_2004,sam SAM-Argentina_JN669627_2004,sam SAM-Argentina_JN669628_2004,sam SAM-Argentina_JN669632_2004,sam SAM-Argentina_JN669635_2004,sam SAM-Argentina_JN669637_2004,sam SAM-Argentina_JN669638_2004,sam SAM-Argentina_JN669639_2004,sam SAM-Argentina_JN669643_2004,sam SAM-Argentina_JN669645_2004,sam SAM-Argentina_JN669649_2004,sam SAM-Argentina_JN669650_2004,sam SAM-Argentina_JN669653_2004,sam SAM-Argentina_JN669657_2004,sam SAM-Argentina_JN669658_2004,sam SAM-Argentina_JN669659_2004,sam SAM-Argentina_JN669661_2004,sam SAM-Argentina_JN669664_2004,sam SAM-Argentina_JN669666_2004,sam SAM-Argentina_JN669667_2004,sam SAM-Argentina_JN669669_2004,sam SAM-Argentina_JN669670_2004,sam SAM-Argentina_JN669671_2004,sam SAM-Argentina_JN669672_2004,sam SAM-Argentina_JN669674_2004,sam SAM-Argentina_JN669675_2004,sam SAM-Argentina_JN669676_2004,sam SAM-Argentina_JN669677_2004,sam SAM-Argentina_JN669678_2004,sam SAM-Argentina_JN669680_2004,sam SAM-Argentina_JN669683_2004,sam SAM-Argentina_JN669686_2004,sam SAM-Argentina_JN669687_2004,sam SAM-Argentina_JN669695_2004,sam SAM-Argentina_JN669702_2004,sam SAM-Argentina_JN669704_2004,sam SAM-Argentina_JN669705_2004,sam SAM-Argentina_JN669706_2004,sam SAM-Argentina_JN669707_2004,sam SAM-Argentina_JN669709_2004,sam SAM-Argentina_JN669710_2004,sam SAM-Argentina_JN669711_2004,sam SAM-Argentina_JN669712_2004,sam SAM-Argentina_JN669713_2004,sam SAM-Argentina_JN669717_2004,sam SAM-Argentina_JN669722_2004,sam SAM-Argentina_JN669725_2004,sam SAM-Argentina_JN669726_2004,sam SAM-Argentina_JN669729_2004,sam SAM-Argentina_JN669732_2004,sam SAM-Argentina_JN669736_2004,sam SAM-Argentina_JN669740_2004,sam SAM-Argentina_JN669742_2004,sam SAM-Argentina_JN669744_2004,sam SAM-Argentina_JN669746_2004,sam SAM-Argentina_JN669747_2004,sam SAM-Argentina_JN669748_2004,sam SAM-Argentina_JN669749_2004,sam SAM-Argentina_JN669751_2004,sam SAM-Argentina_JN669754_2004,sam SAM-Argentina_JN669755_Unknown,sam SAM-Argentina_JN669759_2004,sam SAM-Argentina_JN669760_2004,sam SAM-Argentina_JN669762_2004,sam SAM-Argentina_JN669763_2004,sam SAM-Argentina_JN669764_2004,sam SAM-Argentina_JN669768_2004,sam SAM-Argentina_JN669769_2004,sam SAM-Argentina_JN669770_2004,sam SAM-Argentina_JN669771_2004,sam SAM-Argentina_JN669773_2004,sam SAM-Argentina_JN669774_2004,sam SAM-Argentina_JN669777_2004,sam SAM-Argentina_JN669779_2004,sam SAM-Argentina_JN669781_2004,sam SAM-Argentina_JN669782_2004,sam SAM-Argentina_JN669787_2004,sam SAM-Argentina_JN669788_2004,sam SAM-Argentina_JN669790_2004,sam SAM-Argentina_JN669791_2004,sam SAM-Argentina_JN669792_2004,sam SAM-Argentina_JN669794_2007,sam SAM-Argentina_JN669795_2004,sam SAM-Argentina_JN669798_2004,sam SAM-Argentina_JN669799_2004,sam SAM-Argentina_JN669800_2004,sam SAM-Argentina_JN669803_2004,sam SAM-Argentina_JN669804_2004,sam SAM-Argentina_JN669807_2004,sam SAM-Argentina_JN669810_2004,sam SAM-Argentina_JN669812_2004,sam SAM-Argentina_JN669814_2004,sam SAM-Argentina_JN669815_2004,sam SAM-Argentina_JN669818_2004,sam SAM-Argentina_JN669819_2004,sam SAM-Argentina_JN669821_Unknown,sam SAM-Argentina_JN669822_2004,sam SAM-Argentina_JN669823_2004,sam SAM-Argentina_JN669827_2004,sam SAM-Argentina_JN669829_2004,sam SAM-Argentina_JN669830_2004,sam SAM-Argentina_JN669831_2004,sam SAM-Argentina_JN669832_2004,sam SAM-Argentina_JN669833_2004,sam SAM-Argentina_JN669835_2004,sam SAM-Argentina_JN669836_2004,sam SAM-Argentina_JN669837_2004,sam SAM-Argentina_JN669838_2004,sam SAM-Argentina_JN669840_2004,sam SAM-Argentina_JN669841_2004,sam SAM-Argentina_JN669844_2004,sam SAM-Argentina_JN669845_2004,sam SAM-Argentina_JN669847_2004,sam SAM-Argentina_JN669849_2004,sam SAM-Argentina_JN669850_2004,sam SAM-Argentina_JN669853_2004,sam SAM-Argentina_JN669854_2004,sam SAM-Argentina_JN669855_2004,sam SAM-Argentina_JN669857_2004,sam SAM-Argentina_JN669859_2004,sam SAM-Argentina_JN669860_2004,sam SAM-Argentina_JN669861_2004,sam SAM-Argentina_JN669862_2004,sam SAM-Argentina_JN669868_2004,sam SAM-Argentina_JN669870_2004,sam SAM-Argentina_JN669871_2004,sam SAM-Argentina_JN669872_2004,sam SAM-Argentina_JN669874_2004,sam SAM-Argentina_JN669875_2004,sam SAM-Argentina_JN669876_2004,sam SAM-Argentina_JN669877_2004,sam SAM-Argentina_JN669884_2004,sam SAM-Argentina_JN669886_2004,sam SAM-Argentina_JN669887_2004,sam SAM-Argentina_JN669889_2004,sam SAM-Argentina_JN669891_2004,sam SAM-Argentina_JN669894_2004,sam SAM-Argentina_JN669897_2004,sam SAM-Argentina_JN669898_2004,sam SAM-Argentina_JN669900_2004,sam SAM-Argentina_JN669902_2004,sam SAM-Argentina_JN669904_2004,sam SAM-Argentina_JN669907_2004,sam SAM-Argentina_JN669908_2004,sam SAM-Argentina_JN669909_2004,sam SAM-Argentina_JN669913_2004,sam SAM-Argentina_JN669915_2004,sam SAM-Argentina_JN669917_2004,sam SAM-Argentina_JN669918_2004,sam SAM-Argentina_JN669920_Unknown,sam SAM-Argentina_JN669921_2004,sam SAM-Argentina_JN669923_2004,sam SAM-Argentina_JN669926_2004,sam SAM-Argentina_JN669929_2004,sam SAM-Argentina_JN669931_2004,sam SAM-Argentina_JN669932_2004,sam SAM-Argentina_JN669933_2004,sam SAM-Argentina_JN669934_2004,sam SAM-Argentina_JN669937_2004,sam SAM-Argentina_JN669938_2004,sam SAM-Argentina_JN669941_2004,sam SAM-Argentina_JN669942_2004,sam SAM-Argentina_JN669945_2004,sam SAM-Argentina_JN669950_2004,sam SAM-Argentina_JN669951_2004,sam SAM-Argentina_JN669952_2004,sam SAM-Argentina_JN669958_2004,sam SAM-Argentina_JN669962_2004,sam SAM-Argentina_JN669963_2004,sam SAM-Argentina_JN669964_2004,sam SAM-Argentina_JN669965_2004,sam SAM-Argentina_JN669967_2004,sam SAM-Argentina_JN669970_2004,sam SAM-Argentina_JN669971_2004,sam SAM-Argentina_JN669978_2004,sam SAM-Argentina_JN669979_2004,sam SAM-Argentina_JN669982_2004,sam SAM-Argentina_JN669985_2004,sam SAM-Argentina_JN669986_2004,sam SAM-Argentina_JN669989_2004,sam SAM-Argentina_JN669990_2004,sam SAM-Argentina_JN669993_2004,sam SAM-Argentina_JN669994_2004,sam SAM-Argentina_JN669995_2004,sam SAM-Argentina_JN669997_2004,sam SAM-Argentina_JN669998_2004,sam SAM-Argentina_JN670002_2004,sam SAM-Argentina_JN670005_2004,sam SAM-Argentina_JN670006_2004,sam SAM-Argentina_JN670017_2004,sam SAM-Argentina_JN670019_2004,sam SAM-Argentina_JN670021_2004,sam SAM-Argentina_JN670023_2004,sam SAM-Argentina_JN670031_2004,sam SAM-Argentina_JN670032_2004,sam SAM-Argentina_JN670033_2004,sam SAM-Argentina_JN670034_2004,sam SAM-Argentina_JN670035_2004,sam SAM-Argentina_JN670036_2004,sam SAM-Argentina_JN670037_2004,sam SAM-Argentina_JN670038_2004,sam SAM-Argentina_JN670042_2005,sam SAM-Argentina_JN670043_2005,sam SAM-Argentina_JN670044_2005,sam SAM-Argentina_JN670046_2005,sam SAM-Argentina_JN670047_2005,sam SAM-Argentina_JN670048_2005,sam SAM-Argentina_JN670051_2005,sam SAM-Argentina_JN670052_2005,sam SAM-Argentina_JN670053_2005,sam SAM-Argentina_JN670054_2005,sam SAM-Argentina_JN670055_2005,sam SAM-Argentina_JN670056_2005,sam SAM-Argentina_JN670057_2005,sam SAM-Argentina_JN670059_2005,sam SAM-Argentina_JN670062_2005,sam SAM-Argentina_JN670063_2005,sam SAM-Argentina_JN670064_2005,sam SAM-Argentina_JN670066_2005,sam SAM-Argentina_JN670067_2005,sam SAM-Argentina_JN670071_2005,sam SAM-Argentina_JN670072_2005,sam SAM-Argentina_JN670076_2005,sam SAM-Argentina_JN670084_2005,sam SAM-Argentina_JN670085_2005,sam SAM-Argentina_JN670086_2005,sam SAM-Argentina_JN670087_2005,sam SAM-Argentina_JN670095_2005,sam SAM-Argentina_JN670096_2005,sam SAM-Argentina_JN670099_2005,sam SAM-Argentina_JN670101_2005,sam SAM-Argentina_JN670103_2005,sam SAM-Argentina_JN670104_2005,sam SAM-Argentina_JN670107_2005,sam SAM-Argentina_JN670108_2005,sam SAM-Argentina_JN670110_2005,sam SAM-Argentina_JN670111_2005,sam SAM-Argentina_JN670112_2005,sam SAM-Argentina_JN670113_2005,sam SAM-Argentina_JN670115_2005,sam SAM-Argentina_JN670116_2005,sam SAM-Argentina_JN670118_2005,sam SAM-Argentina_JN670120_2005,sam SAM-Argentina_JN670123_2005,sam SAM-Argentina_JN670125_2005,sam SAM-Argentina_JN670128_2005,sam SAM-Argentina_JN670131_2005,sam SAM-Argentina_JN670133_2005,sam SAM-Argentina_JN670134_2005,sam SAM-Argentina_JN670135_2005,sam SAM-Argentina_JN670136_2005,sam SAM-Argentina_JN670140_2005,sam SAM-Argentina_JN670144_2005,sam SAM-Argentina_JN670146_2005,sam SAM-Argentina_JN670149_2005,sam SAM-Argentina_JN670153_2005,sam SAM-Argentina_JN670154_2005,sam SAM-Argentina_JN670155_2005,sam SAM-Argentina_JN670158_2005,sam SAM-Argentina_JN670163_2005,sam SAM-Argentina_JN670164_2005,sam SAM-Argentina_JN670167_2005,sam SAM-Argentina_JN670169_2005,sam SAM-Argentina_JN670170_2005,sam SAM-Argentina_JN670171_2005,sam SAM-Argentina_JN670172_2005,sam SAM-Argentina_JN670175_2005,sam SAM-Argentina_JN670176_2005,sam SAM-Argentina_JN670177_2005,sam SAM-Argentina_JN670181_2005,sam SAM-Argentina_JN670183_2005,sam SAM-Argentina_JN670185_2005,sam SAM-Argentina_JN670186_2005,sam SAM-Argentina_JN670187_2005,sam SAM-Argentina_JN670189_2005,sam SAM-Argentina_JN670191_2005,sam SAM-Argentina_JN670192_2005,sam SAM-Argentina_JN670193_2005,sam SAM-Argentina_JN670197_2005,sam SAM-Argentina_JN670198_2005,sam SAM-Argentina_JN670202_2005,sam SAM-Argentina_JN670205_2005,sam SAM-Argentina_JN670206_2005,sam SAM-Argentina_JN670208_2005,sam SAM-Argentina_JN670209_2005,sam SAM-Argentina_JN670210_2005,sam SAM-Argentina_JN670214_2005,sam SAM-Argentina_JN670215_2005,sam SAM-Argentina_JN670216_2005,sam SAM-Argentina_JN670217_2005,sam SAM-Argentina_JN670218_2005,sam SAM-Argentina_JN670225_2005,sam SAM-Argentina_JN670226_2005,sam SAM-Argentina_JN670227_2005,sam SAM-Argentina_JN670228_2005,sam SAM-Argentina_JN670229_2005,sam SAM-Argentina_JN670234_2005,sam SAM-Argentina_JN670241_2005,sam SAM-Argentina_JN670245_2005,sam SAM-Argentina_JN670248_2005,sam SAM-Argentina_JN670249_2005,sam SAM-Argentina_JN670252_2005,sam SAM-Argentina_JN670255_2005,sam SAM-Argentina_JN670260_2005,sam SAM-Argentina_JN670261_2005,sam SAM-Argentina_JN670262_2005,sam SAM-Argentina_JN670264_2005,sam SAM-Argentina_JN670265_2005,sam SAM-Argentina_JN670268_2005,sam SAM-Argentina_JN670272_2005,sam SAM-Argentina_JN670273_2005,sam SAM-Argentina_JN670275_Unknown,sam SAM-Argentina_JN670277_2005,sam SAM-Argentina_JN670280_2005,sam SAM-Argentina_JN670281_2005,sam SAM-Argentina_JN670287_2005,sam SAM-Argentina_JN670291_2005,sam SAM-Argentina_JN670295_2005,sam SAM-Argentina_JN670298_2005,sam SAM-Argentina_JN670303_2005,sam SAM-Argentina_JN670304_2005,sam SAM-Argentina_JN670318_2005,sam SAM-Argentina_JN670319_2005,sam SAM-Argentina_JN670322_2005,sam SAM-Argentina_JN670323_2005,sam SAM-Argentina_JN670325_2005,sam SAM-Argentina_JN670326_2005,sam SAM-Argentina_JN670328_2005,sam SAM-Argentina_JN670329_2005,sam SAM-Argentina_JN670331_2005,sam SAM-Argentina_JN670333_2005,sam SAM-Argentina_JN670334_2005,sam SAM-Argentina_JN670337_2005,sam SAM-Argentina_JN670338_2005,sam SAM-Argentina_JN670340_2005,sam SAM-Argentina_JN670345_Unknown,sam SAM-Argentina_JN670346_2005,sam SAM-Argentina_JN670347_2005,sam SAM-Argentina_JN670348_2005,sam SAM-Argentina_JN670350_2005,sam SAM-Argentina_JN670351_2005,sam SAM-Argentina_JN670352_2005,sam SAM-Argentina_JN670356_2005,sam SAM-Argentina_JN670358_2005,sam SAM-Argentina_JN670362_2005,sam SAM-Argentina_JN670366_2005,sam SAM-Argentina_JN670367_2005,sam SAM-Argentina_JN670369_2005,sam SAM-Argentina_JN670370_2005,sam SAM-Argentina_JN670371_2005,sam SAM-Argentina_JN670376_2005,sam SAM-Argentina_JN670377_2005,sam SAM-Argentina_JN670379_2005,sam SAM-Argentina_JN670385_2005,sam SAM-Argentina_JN670387_2005,sam SAM-Argentina_JN670388_2005,sam SAM-Argentina_JN670392_2005,sam SAM-Argentina_JN670394_2005,sam SAM-Argentina_JN670396_2005,sam SAM-Argentina_JN670400_2005,sam SAM-Argentina_JN670402_2005,sam SAM-Argentina_JN670403_2005,sam SAM-Argentina_JN670407_2005,sam SAM-Argentina_JN670408_2005,sam SAM-Argentina_JN670411_2005,sam SAM-Argentina_JN670412_2005,sam SAM-Argentina_JN670413_2005,sam SAM-Argentina_JN670417_2005,sam SAM-Argentina_JN670423_Unknown,sam SAM-Argentina_JN670424_Unknown,sam SAM-Argentina_JN670426_2005,sam SAM-Argentina_JN670431_Unknown,sam SAM-Argentina_JN670433_2005,sam SAM-Argentina_JN670437_2005,sam SAM-Argentina_JN670440_2005,sam SAM-Argentina_JN670441_2005,sam SAM-Argentina_JN670446_2005,sam SAM-Argentina_JN670447_2005,sam SAM-Argentina_JN670448_2005,sam SAM-Argentina_JN670449_2005,sam SAM-Argentina_JN670451_2005,sam SAM-Argentina_JN670452_2005,sam SAM-Argentina_JN670453_2005,sam SAM-Argentina_JN670457_2005,sam SAM-Argentina_JN670458_2005,sam SAM-Argentina_JN670460_Unknown,sam SAM-Argentina_JN670465_2005,sam SAM-Argentina_JN670466_2005,sam SAM-Argentina_JN670467_2005,sam SAM-Argentina_JN670474_2005,sam SAM-Argentina_JN670481_2005,sam SAM-Argentina_JN670483_2005,sam SAM-Argentina_JN670485_2005,sam SAM-Argentina_JN670489_2005,sam SAM-Argentina_JN670490_2005,sam SAM-Argentina_JN670493_2005,sam SAM-Argentina_JN670494_2005,sam SAM-Argentina_JN670496_2005,sam SAM-Argentina_JN670497_2005,sam SAM-Argentina_JN670498_2005,sam SAM-Argentina_JN670507_2005,sam SAM-Argentina_JN670508_2005,sam SAM-Argentina_JN670519_2005,sam SAM-Argentina_JN670520_2005,sam SAM-Argentina_JN670522_2005,sam SAM-Argentina_JN670527_2005,sam SAM-Argentina_JN670532_2005,sam SAM-Argentina_JN670534_2005,sam SAM-Argentina_JN670535_2005,sam SAM-Argentina_JN670536_2005,sam SAM-Argentina_JN670539_2005,sam SAM-Argentina_JN670542_2005,sam SAM-Argentina_JN670543_2005,sam SAM-Argentina_JN670544_2005,sam SAM-Argentina_JN670547_2005,sam SAM-Argentina_JN670550_2005,sam SAM-Argentina_JN670553_2005,sam SAM-Argentina_JN670554_2005,sam SAM-Argentina_JN670555_2005,sam SAM-Argentina_JN670556_2005,sam SAM-Argentina_JN670558_2005,sam SAM-Argentina_JN670560_2005,sam SAM-Argentina_JN670561_2005,sam SAM-Argentina_JN670562_2005,sam SAM-Argentina_JN670567_2005,sam SAM-Argentina_JN670568_2005,sam SAM-Argentina_JN670569_2005,sam SAM-Argentina_JN670572_2005,sam SAM-Argentina_JN670573_2005,sam SAM-Argentina_JN670574_2005,sam SAM-Argentina_JN670575_2005,sam SAM-Argentina_JN670577_2005,sam SAM-Argentina_JN670578_2005,sam SAM-Argentina_JN670579_2005,sam SAM-Argentina_JN670580_2005,sam SAM-Argentina_JN670581_2005,sam SAM-Argentina_JN670584_2005,sam SAM-Argentina_JN670586_2005,sam SAM-Argentina_JN670588_2005,sam SAM-Argentina_JN670596_2005,sam SAM-Argentina_JN670598_2005,sam SAM-Argentina_JN670600_2005,sam SAM-Argentina_JN670602_2005,sam SAM-Argentina_JN670604_2005,sam SAM-Argentina_JN670607_2005,sam SAM-Argentina_JN670610_2005,sam SAM-Argentina_JN670613_2005,sam SAM-Argentina_JN670616_2005,sam SAM-Argentina_JN670617_2005,sam SAM-Argentina_JN670619_2005,sam SAM-Argentina_JN670620_2005,sam SAM-Argentina_JN670622_2005,sam SAM-Argentina_JN670625_2006,sam SAM-Argentina_JN670626_2006,sam SAM-Argentina_JN670628_2006,sam SAM-Argentina_JN670629_2006,sam SAM-Argentina_JN670631_2006,sam SAM-Argentina_JN670633_2006,sam SAM-Argentina_JN670634_2006,sam SAM-Argentina_JN670636_2006,sam SAM-Argentina_JN670640_2006,sam SAM-Argentina_JN670641_2006,sam SAM-Argentina_JN670644_2006,sam SAM-Argentina_JN670645_2006,sam SAM-Argentina_JN670646_2006,sam SAM-Argentina_JN670651_2006,sam SAM-Argentina_JN670652_2006,sam SAM-Argentina_JN670653_2006,sam SAM-Argentina_JN670655_2006,sam SAM-Argentina_JN670657_2006,sam SAM-Argentina_JN670661_2006,sam SAM-Argentina_JN670663_2006,sam SAM-Argentina_JN670664_2006,sam SAM-Argentina_JN670669_2006,sam SAM-Argentina_JN670674_2006,sam SAM-Argentina_JN670675_2006,sam SAM-Argentina_JN670677_2006,sam SAM-Argentina_JN670681_2006,sam SAM-Argentina_JN670686_2006,sam SAM-Argentina_JN670687_2006,sam SAM-Argentina_JN670688_2006,sam SAM-Argentina_JN670690_2006,sam SAM-Argentina_JN670692_2006,sam SAM-Argentina_JN670695_2006,sam SAM-Argentina_JN670696_2006,sam SAM-Argentina_JN670698_2006,sam SAM-Argentina_JN670699_2006,sam SAM-Argentina_JN670700_2006,sam SAM-Argentina_JN670703_2006,sam SAM-Argentina_JN670704_2006,sam SAM-Argentina_JN670707_2006,sam SAM-Argentina_JN670708_2006,sam SAM-Argentina_JN670709_2006,sam SAM-Argentina_JN670713_2006,sam SAM-Argentina_JN670714_2006,sam SAM-Argentina_JN670716_2006,sam SAM-Argentina_JN670718_2006,sam SAM-Argentina_JN670719_2006,sam SAM-Argentina_JN670723_2006,sam SAM-Argentina_JN670726_2006,sam SAM-Argentina_JN670730_2006,sam SAM-Argentina_JN670732_2006,sam SAM-Argentina_JN670740_2006,sam SAM-Argentina_JN670741_2006,sam SAM-Argentina_JN670745_2006,sam SAM-Argentina_JN670749_2006,sam SAM-Argentina_JN670752_2006,sam SAM-Argentina_JN670756_2006,sam SAM-Argentina_JN670757_2006,sam SAM-Argentina_JN670759_2006,sam SAM-Argentina_JN670760_2006,sam SAM-Argentina_JN670771_2006,sam SAM-Argentina_JN670774_2006,sam SAM-Argentina_JN670775_2006,sam SAM-Argentina_JN670782_2006,sam SAM-Argentina_JN670788_2006,sam SAM-Argentina_JN670790_2006,sam SAM-Argentina_JN670791_2006,sam SAM-Argentina_JN670793_2006,sam SAM-Argentina_JN670799_2006,sam SAM-Argentina_JN670805_2006,sam SAM-Argentina_JN670806_2006,sam SAM-Argentina_JN670810_2006,sam SAM-Argentina_JN670812_2006,sam SAM-Argentina_JN670813_2006,sam SAM-Argentina_JN670814_2006,sam SAM-Argentina_JN670815_2006,sam SAM-Argentina_JN670818_2006,sam SAM-Argentina_JN670820_2006,sam SAM-Argentina_JN670821_2006,sam SAM-Argentina_JN670822_2006,sam SAM-Argentina_JN670829_2006,sam SAM-Argentina_JN670832_2006,sam SAM-Argentina_JN670833_2006,sam SAM-Argentina_JN670840_2006,sam SAM-Argentina_JN670841_2006,sam SAM-Argentina_JN670843_2006,sam SAM-Argentina_JN670845_2006,sam SAM-Argentina_JN670847_2006,sam SAM-Argentina_JN670850_2006,sam SAM-Argentina_JN670852_2006,sam SAM-Argentina_JN670854_2006,sam SAM-Argentina_JN670855_2006,sam SAM-Argentina_JN670858_2006,sam SAM-Argentina_JN670860_2006,sam SAM-Argentina_JN670861_2006,sam SAM-Argentina_JN670867_2006,sam SAM-Argentina_JN670869_2006,sam SAM-Argentina_JN670871_2006,sam SAM-Argentina_JN670874_2006,sam SAM-Argentina_JN670878_2006,sam SAM-Argentina_JN670882_2006,sam SAM-Argentina_JN670884_2006,sam SAM-Argentina_JN670885_2006,sam SAM-Argentina_JN670888_2006,sam SAM-Argentina_JN670889_2006,sam SAM-Argentina_JN670891_2006,sam SAM-Argentina_JN670892_2006,sam SAM-Argentina_JN670896_2006,sam SAM-Argentina_JN670897_2006,sam SAM-Argentina_JN670899_2006,sam SAM-Argentina_JN670900_2006,sam SAM-Argentina_JN670902_2006,sam SAM-Argentina_JN670903_2006,sam SAM-Argentina_JN670908_2006,sam SAM-Argentina_JN670909_2006,sam SAM-Argentina_JN670910_2006,sam SAM-Argentina_JN670915_2006,sam SAM-Argentina_JN670916_2006,sam SAM-Argentina_JN670917_2006,sam SAM-Argentina_JN670921_2006,sam SAM-Argentina_JN670925_2006,sam SAM-Argentina_JN670927_2006,sam SAM-Argentina_JN670928_2006,sam SAM-Argentina_JN670931_2006,sam SAM-Argentina_JN670933_2006,sam SAM-Argentina_JN670936_2006,sam SAM-Argentina_JN670937_2006,sam SAM-Argentina_JN670940_2006,sam SAM-Argentina_JN670941_2006,sam SAM-Argentina_JN670942_2006,sam SAM-Argentina_JN670943_2006,sam SAM-Argentina_JN670944_2006,sam SAM-Argentina_JN670948_2006,sam SAM-Argentina_JN670950_2006,sam SAM-Argentina_JN670951_2006,sam SAM-Argentina_JN670952_2006,sam SAM-Argentina_JN670954_2006,sam SAM-Argentina_JN670958_2006,sam SAM-Argentina_JN670959_2006,sam SAM-Argentina_JN670960_2006,sam SAM-Argentina_JN670962_2006,sam SAM-Argentina_JN670963_2006,sam SAM-Argentina_JN670966_2006,sam SAM-Argentina_JN670969_2006,sam SAM-Argentina_JN670975_2006,sam SAM-Argentina_JN670977_2006,sam SAM-Argentina_JN670979_2006,sam SAM-Argentina_JN670981_2006,sam SAM-Argentina_JN670982_2006,sam SAM-Argentina_JN670983_2006,sam SAM-Argentina_JN670984_2006,sam SAM-Argentina_JN670985_2006,sam SAM-Argentina_JN670989_2006,sam SAM-Argentina_JN670991_2006,sam SAM-Argentina_JN670992_2006,sam SAM-Argentina_JN670993_2006,sam SAM-Argentina_JN670998_2006,sam SAM-Argentina_JN671003_2006,sam SAM-Argentina_JN671008_2006,sam SAM-Argentina_JN671010_2006,sam SAM-Argentina_JN671013_2006,sam SAM-Argentina_JN671017_2006,sam SAM-Argentina_JN671021_2006,sam SAM-Argentina_JN671024_2006,sam SAM-Argentina_JN671026_2006,sam SAM-Argentina_JN671028_2006,sam SAM-Argentina_JN671031_2006,sam SAM-Argentina_JN671033_2006,sam SAM-Argentina_JN671036_2006,sam SAM-Argentina_JN671037_2006,sam SAM-Argentina_JN671040_2006,sam SAM-Argentina_JN671041_2006,sam SAM-Argentina_JN671046_2006,sam SAM-Argentina_JN671047_2006,sam SAM-Argentina_JN671048_2006,sam SAM-Argentina_JN671049_2006,sam SAM-Argentina_JN671051_2006,sam SAM-Argentina_JN671058_2006,sam SAM-Argentina_JN671059_2006,sam SAM-Argentina_JN671060_2006,sam SAM-Argentina_JN671061_2006,sam SAM-Argentina_JN671062_2006,sam SAM-Argentina_JN671066_2006,sam SAM-Argentina_JN671067_2006,sam SAM-Argentina_JN671069_2006,sam SAM-Argentina_JN671070_2006,sam SAM-Argentina_JN671071_2006,sam SAM-Argentina_JN671072_2006,sam SAM-Argentina_JN671074_2006,sam SAM-Argentina_JN671075_2006,sam SAM-Argentina_JN671078_2006,sam SAM-Argentina_JN671080_2006,sam SAM-Argentina_JN671081_2006,sam SAM-Argentina_JN671083_2006,sam SAM-Argentina_JN671084_2006,sam SAM-Argentina_JN671085_2006,sam SAM-Argentina_JN671087_2006,sam SAM-Argentina_JN671089_2006,sam SAM-Argentina_JN671090_2006,sam SAM-Argentina_JN671091_2006,sam SAM-Argentina_JN671092_2006,sam SAM-Argentina_JN671094_2006,sam SAM-Argentina_JN671096_2006,sam SAM-Argentina_JN671098_2006,sam SAM-Argentina_JN671099_2006,sam SAM-Argentina_JN671103_2006,sam SAM-Argentina_JN671106_2006,sam SAM-Argentina_JN671112_2006,sam SAM-Argentina_JN671116_2006,sam SAM-Argentina_JN671117_2006,sam SAM-Argentina_JN671119_2006,sam SAM-Argentina_JN671122_2006,sam SAM-Argentina_JN671123_2006,sam SAM-Argentina_JN671124_2006,sam SAM-Argentina_JN671125_2006,sam SAM-Argentina_JN671126_2006,sam SAM-Argentina_JN671127_2006,sam SAM-Argentina_JN671132_2006,sam SAM-Argentina_JN671137_2006,sam SAM-Argentina_JN671141_2006,sam SAM-Argentina_JN671142_2006,sam SAM-Argentina_JN671149_2006,sam SAM-Argentina_JN671150_2006,sam SAM-Argentina_JN671151_2006,sam SAM-Argentina_JN671153_2006,sam SAM-Argentina_JN671154_2006,sam SAM-Argentina_JN671155_2006,sam SAM-Argentina_JN671156_2006,sam SAM-Argentina_JN671160_2006,sam SAM-Argentina_JN671162_2006,sam SAM-Argentina_JN671167_2006,sam SAM-Argentina_JN671169_2006,sam SAM-Argentina_JN671171_2006,sam SAM-Argentina_JN671173_2006,sam SAM-Argentina_JN671174_2006,sam SAM-Argentina_JN671176_2006,sam SAM-Argentina_JN671179_2006,sam SAM-Argentina_JN671181_2006,sam SAM-Argentina_JN671182_2006,sam SAM-Argentina_JN671183_2006,sam SAM-Argentina_JN671188_2006,sam SAM-Argentina_JN671189_2006,sam SAM-Argentina_JN671190_2006,sam SAM-Argentina_JN671192_2006,sam SAM-Argentina_JN671193_2006,sam SAM-Argentina_JN671194_2006,sam SAM-Argentina_JN671197_2006,sam SAM-Argentina_JN671199_2006,sam SAM-Argentina_JN671209_2006,sam SAM-Argentina_JN671210_2006,sam SAM-Argentina_JN671213_2006,sam SAM-Argentina_JN671215_2006,sam SAM-Argentina_JN671218_2006,sam SAM-Argentina_JN671222_2006,sam SAM-Argentina_JN671223_2006,sam SAM-Argentina_JN671226_2006,sam SAM-Argentina_JN671227_2006,sam SAM-Argentina_JN671229_2006,sam SAM-Argentina_JN671230_2006,sam SAM-Argentina_JN671233_2006,sam SAM-Argentina_JN671234_2006,sam SAM-Argentina_JN671237_2006,sam SAM-Argentina_JN671238_2006,sam SAM-Argentina_JN671239_2006,sam SAM-Argentina_JN671241_2006,sam SAM-Argentina_JN671242_2006,sam SAM-Argentina_JN671243_2006,sam SAM-Argentina_JN671245_2006,sam SAM-Argentina_JN671246_2006,sam SAM-Argentina_JN671247_2007,sam SAM-Argentina_JN671249_2007,sam SAM-Argentina_JN671250_2007,sam SAM-Argentina_JN671253_2007,sam SAM-Argentina_JN671256_2007,sam SAM-Argentina_JN671257_2007,sam SAM-Argentina_JN671259_2007,sam SAM-Argentina_JN671260_2007,sam SAM-Argentina_JN671261_2007,sam SAM-Argentina_JN671262_2007,sam SAM-Argentina_JN671264_2007,sam SAM-Argentina_JN671266_2007,sam SAM-Argentina_JN671270_2007,sam SAM-Argentina_JN671271_2007,sam SAM-Argentina_JN671274_2007,sam SAM-Argentina_JN671275_2007,sam SAM-Argentina_JN671276_2007,sam SAM-Argentina_JN671280_2007,sam SAM-Argentina_JN671282_2007,sam SAM-Argentina_JN671288_2007,sam SAM-Argentina_JN671291_2007,sam SAM-Argentina_JN671294_2007,sam SAM-Argentina_JN671297_2007,sam SAM-Argentina_JN671298_2007,sam SAM-Argentina_JN671300_2007,sam SAM-Argentina_JN671301_2007,sam SAM-Argentina_JN671302_2007,sam SAM-Argentina_JN671304_2007,sam SAM-Argentina_JN671305_2007,sam SAM-Argentina_JN671306_2007,sam SAM-Argentina_JN671307_2007,sam SAM-Argentina_JN671313_2007,sam SAM-Argentina_JN671314_2007,sam SAM-Argentina_JN671315_2007,sam SAM-Argentina_JN671316_2007,sam SAM-Argentina_JN671317_2007,sam SAM-Argentina_JN671320_2007,sam SAM-Argentina_JN671322_2007,sam SAM-Argentina_JN671333_2007,sam SAM-Argentina_JN671345_2007,sam SAM-Argentina_JN671348_2007,sam SAM-Argentina_JN671351_2007,sam SAM-Argentina_JN671353_2007,sam SAM-Argentina_JN671354_2007,sam SAM-Argentina_JN671355_2007,sam SAM-Argentina_JN671356_2007,sam SAM-Argentina_JN671357_2007,sam SAM-Argentina_JN671360_2007,sam SAM-Argentina_JN671365_2007,sam SAM-Argentina_JN671367_2007,sam SAM-Argentina_JN671368_2007,sam SAM-Argentina_JN671369_2007,sam SAM-Argentina_JN671370_2007,sam SAM-Argentina_JN671375_2007,sam SAM-Argentina_JN671376_2007,sam SAM-Argentina_JN671377_2007,sam SAM-Argentina_JN671378_2007,sam SAM-Argentina_JN671379_2007,sam SAM-Argentina_JN671380_2007,sam SAM-Argentina_JN671381_2007,sam SAM-Argentina_JN671385_2007,sam SAM-Argentina_JN671386_2007,sam SAM-Argentina_JN671387_2007,sam SAM-Argentina_JN671388_2007,sam SAM-Argentina_JN671389_2007,sam SAM-Argentina_JN671390_2007,sam SAM-Argentina_JN671391_2007,sam SAM-Argentina_JN671392_2007,sam SAM-Argentina_JN671395_2007,sam SAM-Argentina_JN671396_2007,sam SAM-Argentina_JN671399_2007,sam SAM-Argentina_JN671400_2007,sam SAM-Argentina_JN671402_2007,sam SAM-Argentina_JN671404_2007,sam SAM-Argentina_JN671405_2007,sam SAM-Argentina_JN671406_2007,sam SAM-Argentina_JN671407_2007,sam SAM-Argentina_JN671408_2007,sam SAM-Argentina_JN671410_2007,sam SAM-Argentina_JN671412_2007,sam SAM-Argentina_JN671413_2007,sam SAM-Argentina_JN671416_2007,sam SAM-Argentina_JN671417_2007,sam SAM-Argentina_JN671418_2007,sam SAM-Argentina_JN671421_2007,sam SAM-Argentina_JN671422_2007,sam SAM-Argentina_JN671427_2007,sam SAM-Argentina_JN671431_2007,sam SAM-Argentina_JN671436_2007,sam SAM-Argentina_JN671438_2007,sam SAM-Argentina_JN671440_2007,sam SAM-Argentina_JN671441_2007,sam SAM-Argentina_JQ653309_1999,sam SAM-Argentina_JQ653312_2000,sam SAM-Argentina_JQ653314_2000,sam SAM-Argentina_JX847142_2007,sam SAM-Argentina_JX847145_2007,sam SAM-Argentina_JX847146_2007,sam SAM-Argentina_JX847149_2007,sam SAM-Argentina_JX847150_2007,sam SAM-Argentina_JX847152_2007,sam SAM-Argentina_JX847154_2007,sam SAM-Argentina_JX847157_2007,sam SAM-Argentina_JX847158_2007,sam SAM-Argentina_JX847167_2008,sam SAM-Argentina_JX847168_2008,sam SAM-Argentina_JX847169_2008,sam SAM-Argentina_JX847175_2008,sam SAM-Argentina_JX847176_2008,sam SAM-Argentina_JX847180_2009,sam SAM-Argentina_JX847183_2009,sam SAM-Argentina_JX847185_2009,sam SAM-Argentina_JX847186_2009,sam SAM-Argentina_JX847187_2009,sam SAM-Argentina_JX847194_2009,sam SAM-Argentina_JX847198_2009,sam SAM-Argentina_JX847201_2009,sam SAM-Argentina_KJ569151_2004,sam SAM-Argentina_KJ569152_2004,sam SAM-Argentina_KJ569153_2004,sam SAM-Argentina_KJ569154_2004,sam SAM-Argentina_KJ569155_2004,sam SAM-Argentina_KJ569156_2004,sam SAM-Argentina_KJ569157_2004,sam SAM-Argentina_KJ569158_2004,sam SAM-Argentina_KJ569159_2004,sam SAM-Argentina_KJ569165_2004,sam SAM-Argentina_KJ569171_2004,sam SAM-Argentina_KJ569173_2004,sam SAM-Argentina_KJ569177_2004,sam SAM-Argentina_KY658683_2008,sam SAM-Argentina_KY658684_2010,sam SAM-Argentina_KY658685_2014,sam SAM-Argentina_KY658686_2007,sam SAM-Argentina_KY968394_2001,sam SAM-Argentina_KY968395_2001,sam SAM-Argentina_KY968396_2002,sam SAM-Argentina_KY968397_2003,sam SAM-Argentina_KY968398_2004,sam SAM-Argentina_KY968399_2004,sam SAM-Argentina_KY968401_2000,sam SAM-Argentina_KY968402_2000,sam SAM-Argentina_KY968403_2000,sam SAM-Argentina_KY968404_2000,sam SAM-Argentina_KY968407_2001,sam SAM-Argentina_KY968408_2001,sam SAM-Argentina_KY968409_2006,sam SAM-Argentina_KY968410_2006,sam SAM-Argentina_KY968411_2006,sam SAM-Argentina_KY968412_2006,sam SAM-Argentina_KY968413_2006,sam SAM-Argentina_KY968414_2006,sam SAM-Argentina_KY968415_2006,sam SAM-Argentina_KY968416_2006,sam SAM-Argentina_KY968417_2006,sam SAM-Argentina_KY968419_2006,sam SAM-Argentina_KY968420_2006,sam SAM-Argentina_KY968422_2006,sam SAM-Argentina_KY968423_2006,sam SAM-Argentina_KY968425_2006,sam SAM-Argentina_KY968426_2006,sam SAM-Argentina_KY968428_2006,sam SAM-Argentina_KY968429_2006,sam SAM-Argentina_KY968431_2007,sam SAM-Argentina_KY968432_2007,sam SAM-Argentina_KY968433_2007,sam SAM-Argentina_KY968434_2007,sam SAM-Argentina_KY968435_2007,sam SAM-Argentina_KY968436_2007,sam SAM-Argentina_KY968437_2007,sam SAM-Argentina_KY968438_2007,sam SAM-Argentina_KY968439_2007,sam SAM-Argentina_KY968440_2007,sam SAM-Argentina_KY968442_2007,sam SAM-Argentina_KY968443_2007,sam SAM-Argentina_KY968446_2007,sam SAM-Argentina_KY968448_2007,sam SAM-Argentina_KY968449_2007,sam SAM-Argentina_KY968451_2007,sam SAM-Argentina_KY968452_2007,sam SAM-Argentina_KY968453_2007,sam SAM-Argentina_KY968454_2007,sam SAM-Argentina_KY968455_2007,sam SAM-Argentina_KY968456_2007,sam SAM-Argentina_KY968457_2007,sam SAM-Argentina_KY968458_2007,sam SAM-Argentina_KY968459_2007,sam SAM-Argentina_KY968462_2007,sam SAM-Argentina_KY968463_2007,sam SAM-Argentina_KY968466_2007,sam SAM-Argentina_KY968468_2007,sam SAM-Argentina_KY968469_2007,sam SAM-Argentina_KY968471_2007,sam SAM-Argentina_KY968472_2007,sam SAM-Argentina_KY968473_2007,sam SAM-Argentina_KY968476_2007,sam SAM-Argentina_KY968477_2007,sam SAM-Argentina_KY968478_2007,sam SAM-Argentina_KY968479_2007,sam SAM-Argentina_KY968480_2007,sam SAM-Argentina_KY968482_2007,sam SAM-Argentina_KY968483_2007,sam SAM-Argentina_KY968484_2007,sam SAM-Argentina_KY968486_2007,sam SAM-Argentina_KY968487_2007,sam SAM-Argentina_KY968488_2007,sam SAM-Argentina_KY968489_2007,sam SAM-Argentina_KY968493_2007,sam SAM-Argentina_KY968494_2007,sam SAM-Argentina_KY968495_2007,sam SAM-Argentina_KY968496_2008,sam SAM-Argentina_KY968497_2008,sam SAM-Argentina_KY968499_2008,sam SAM-Argentina_KY968500_2008,sam SAM-Argentina_KY968501_2008,sam SAM-Argentina_KY968502_2008,sam SAM-Argentina_KY968503_2008,sam SAM-Argentina_KY968504_2008,sam SAM-Argentina_KY968506_2008,sam SAM-Argentina_KY968507_2008,sam SAM-Argentina_KY968508_2008,sam SAM-Argentina_KY968510_2008,sam SAM-Argentina_KY968513_2008,sam SAM-Argentina_KY968516_2008,sam SAM-Argentina_KY968517_2008,sam SAM-Argentina_KY968518_2008,sam SAM-Argentina_KY968521_2008,sam SAM-Argentina_KY968522_2008,sam SAM-Argentina_KY968525_2008,sam SAM-Argentina_KY968527_2008,sam SAM-Argentina_KY968528_2008,sam SAM-Argentina_KY968529_2008,sam SAM-Argentina_KY968530_2008,sam SAM-Argentina_KY968531_2008,sam SAM-Argentina_KY968532_2008,sam SAM-Argentina_KY968533_2008,sam SAM-Argentina_KY968535_2008,sam SAM-Argentina_KY968536_2008,sam SAM-Argentina_KY968537_2008,sam SAM-Argentina_KY968538_2008,sam SAM-Argentina_KY968540_2008,sam SAM-Argentina_KY968543_2008,sam SAM-Argentina_KY968544_2008,sam SAM-Argentina_KY968546_2008,sam SAM-Argentina_KY968548_2008,sam SAM-Argentina_KY968549_2008,sam SAM-Argentina_KY968554_2008,sam SAM-Argentina_KY968555_2008,sam SAM-Argentina_KY968559_2009,sam SAM-Argentina_KY968560_2009,sam SAM-Argentina_KY968561_2009,sam SAM-Argentina_KY968566_2009,sam SAM-Argentina_KY968569_2009,sam SAM-Argentina_KY968570_2009,sam SAM-Argentina_KY968571_2009,sam SAM-Argentina_MF663286_Unknown,sam SAM-Argentina_MF663289_Unknown,sam SAM-Argentina_MF663305_Unknown,sam SAM-Argentina_MH078530_2009,sam SAM-Argentina_MH078531_2014,sam SAM-Argentina_MH078532_2015,sam SAM-Argentina_MH078533_2015,sam EUR-Austria_DQ878531_2003,eur EUR-Austria_DQ878532_2003,eur EUR-Austria_FJ914226_Unknown,eur EUR-Austria_FJ936557_Unknown,eur EUR-Austria_GQ398885_2004,eur EUR-Austria_GQ398889_2003,eur EUR-Austria_GQ398898_2003,eur EUR-Austria_GQ398910_2003,eur EUR-Austria_GQ398912_2003,eur EUR-Austria_GQ398915_2003,eur EUR-Austria_GQ399070_2003,eur EUR-Austria_GQ399085_2004,eur EUR-Austria_GQ399095_2004,eur EUR-Austria_GQ399111_2004,eur EUR-Austria_GQ399153_2003,eur EUR-Austria_GQ399164_2004,eur EUR-Austria_GQ399237_2004,eur EUR-Austria_GQ399315_2005,eur EUR-Austria_GQ399382_2003,eur EUR-Austria_GQ399385_2004,eur EUR-Austria_GQ399386_2004,eur EUR-Austria_GQ399413_2004,eur EUR-Austria_GQ399508_2003,eur EUR-Austria_GQ399522_2003,eur EUR-Austria_GQ399549_2004,eur EUR-Austria_GQ399580_2004,eur EUR-Austria_GQ399629_2004,eur EUR-Austria_GQ399644_2004,eur EUR-Austria_GQ399664_2003,eur EUR-Austria_GQ399695_2003,eur EUR-Austria_GQ399725_2003,eur EUR-Austria_GQ399766_2004,eur EUR-Austria_GQ399818_2003,eur EUR-Austria_GQ399833_2003,eur EUR-Austria_GQ399835_2003,eur EUR-Austria_GQ399897_2004,eur EUR-Austria_GQ399919_2004,eur EUR-Austria_GQ399942_2003,eur EUR-Austria_GQ400059_2004,eur EUR-Austria_GQ400081_2003,eur EUR-Austria_GQ400084_2003,eur EUR-Austria_GQ400106_2003,eur EUR-Austria_GQ400113_2004,eur EUR-Austria_GQ400125_2004,eur EUR-Austria_GQ400188_2003,eur EUR-Austria_GQ400208_2004,eur EUR-Austria_GQ400233_2003,eur EUR-Austria_GQ400307_2004,eur EUR-Austria_GQ400312_2004,eur EUR-Austria_GQ400335_2004,eur EUR-Austria_GQ400383_2004,eur EUR-Austria_GQ400489_2003,eur EUR-Austria_GQ400530_2004,eur EUR-Austria_GQ400531_2004,eur OCE-Australia_AF042100_1986,oce OCE-Australia_AF042101_1987,oce OCE-Australia_AF042102_1993,oce OCE-Australia_AF042103_1995,oce OCE-Australia_AF042104_1996,oce OCE-Australia_AF042105_1996,oce OCE-Australia_AF146728_Unknown,oce OCE-Australia_AF323205_1997,oce OCE-Australia_AF323207_1997,oce OCE-Australia_AF323208_1997,oce OCE-Australia_AF323209_1997,oce OCE-Australia_AF323212_1997,oce OCE-Australia_AF323214_1997,oce OCE-Australia_AF323216_1997,oce OCE-Australia_AF323217_1997,oce OCE-Australia_AF323218_1997,oce OCE-Australia_AF323219_1997,oce OCE-Australia_AF323220_1997,oce OCE-Australia_AF323222_1997,oce OCE-Australia_AF323223_1997,oce OCE-Australia_AF323224_1997,oce OCE-Australia_AF323225_1997,oce OCE-Australia_AF323226_1997,oce OCE-Australia_AF323227_1997,oce OCE-Australia_AF323228_1997,oce OCE-Australia_AF323230_1997,oce OCE-Australia_AF323231_1997,oce OCE-Australia_AF323233_1997,oce OCE-Australia_AF323234_1997,oce OCE-Australia_AF323237_1997,oce OCE-Australia_AF323240_1997,oce OCE-Australia_AF323241_1997,oce OCE-Australia_AF323242_1997,oce OCE-Australia_AF323244_1997,oce OCE-Australia_AF323245_1997,oce OCE-Australia_AF323246_1997,oce OCE-Australia_AF369796_1999,oce OCE-Australia_AF369797_1999,oce OCE-Australia_AF369798_1999,oce OCE-Australia_AF369799_1999,oce OCE-Australia_AF369800_1999,oce OCE-Australia_AF369801_1999,oce OCE-Australia_AF369802_1999,oce OCE-Australia_AF369803_1999,oce OCE-Australia_AF369804_1999,oce OCE-Australia_AF369805_1999,oce OCE-Australia_AF369806_1999,oce OCE-Australia_AF369807_1999,oce OCE-Australia_AF369808_1999,oce OCE-Australia_AF369809_1999,oce OCE-Australia_AF369810_1999,oce OCE-Australia_AF369811_1999,oce OCE-Australia_AF369812_1999,oce OCE-Australia_AF538302_1999,oce OCE-Australia_AF538303_1999,oce OCE-Australia_AF538304_1995,oce OCE-Australia_AF538305_1995,oce OCE-Australia_AF538306_1995,oce OCE-Australia_AF538307_1995,oce OCE-Australia_AY064297_Unknown,oce OCE-Australia_AY064298_Unknown,oce OCE-Australia_AY064299_Unknown,oce OCE-Australia_AY064300_Unknown,oce OCE-Australia_AY064301_Unknown,oce OCE-Australia_AY818644_2004,oce OCE-Australia_AY857022_Unknown,oce OCE-Australia_AY857052_Unknown,oce OCE-Australia_AY857059_Unknown,oce OCE-Australia_AY857127_Unknown,oce OCE-Australia_AY857144_Unknown,oce OCE-Australia_AY857165_Unknown,oce OCE-Australia_DQ676870_2003,oce OCE-Australia_DQ676874_2002,oce OCE-Australia_DQ676877_2003,oce OCE-Australia_DQ676880_2003,oce OCE-Australia_DQ676883_2002,oce OCE-Australia_DQ676886_2003,oce OCE-Australia_DQ878238_2003,oce OCE-Australia_EF178310_2004,oce OCE-Australia_EF178314_2004,oce OCE-Australia_EF178322_2004,oce OCE-Australia_EF178338_2004,oce OCE-Australia_EF178354_2004,oce OCE-Australia_EF178358_2004,oce OCE-Australia_EF178374_2004,oce OCE-Australia_EF178420_2004,oce OCE-Australia_EF178427_2004,oce OCE-Australia_GU367462_Unknown,oce OCE-Australia_GU367465_Unknown,oce OCE-Australia_GU367473_Unknown,oce OCE-Australia_KC237928_2001,oce OCE-Australia_KC238093_2000,oce OCE-Australia_KC238160_2002,oce OCE-Australia_KC238161_2003,oce OCE-Australia_KC238186_2000,oce OCE-Australia_KC238206_2000,oce OCE-Australia_KC238235_2002,oce OCE-Australia_KC238236_2002,oce OCE-Australia_KC238237_2002,oce OCE-Australia_KC238258_2002,oce OCE-Australia_KC238259_2001,oce OCE-Australia_KC238270_2001,oce OCE-Australia_KC238278_2002,oce OCE-Australia_KC238281_2000,oce OCE-Australia_KC238284_2000,oce OCE-Australia_KC238285_2000,oce OCE-Australia_KJ869925_2004,oce OCE-Australia_KJ869926_2004,oce OCE-Australia_KJ869927_2004,oce OCE-Australia_KJ869928_2004,oce OCE-Australia_KJ869929_2004,oce OCE-Australia_KJ869930_2004,oce OCE-Australia_KJ869931_2004,oce OCE-Australia_KJ869932_2005,oce OCE-Australia_KJ869933_2004,oce OCE-Australia_KJ869934_2005,oce OCE-Australia_KJ869935_2005,oce EUR-Belgium_AF338978_1999,eur EUR-Belgium_AF338981_1999,eur EUR-Belgium_AF338983_1999,eur EUR-Belgium_AJ634691_2001,eur EUR-Belgium_AJ634692_2002,eur EUR-Belgium_AJ889842_2004,eur EUR-Belgium_DQ877745_2003,eur EUR-Belgium_DQ877747_2003,eur EUR-Belgium_DQ877751_2003,eur EUR-Belgium_DQ877752_2003,eur EUR-Belgium_DQ877753_2003,eur EUR-Belgium_DQ877759_2003,eur EUR-Belgium_DQ877761_2003,eur EUR-Belgium_DQ877763_2003,eur EUR-Belgium_DQ877764_2003,eur EUR-Belgium_DQ877765_2003,eur EUR-Belgium_DQ877766_2003,eur EUR-Belgium_DQ877769_2003,eur EUR-Belgium_DQ877770_2003,eur EUR-Belgium_DQ877771_2003,eur EUR-Belgium_DQ877772_2003,eur EUR-Belgium_DQ877777_2003,eur EUR-Belgium_DQ877781_2003,eur EUR-Belgium_DQ877782_2003,eur EUR-Belgium_DQ877783_2003,eur EUR-Belgium_DQ877784_2003,eur EUR-Belgium_DQ877785_2003,eur EUR-Belgium_DQ877790_2003,eur EUR-Belgium_DQ877791_2003,eur EUR-Belgium_DQ878230_2003,eur EUR-Belgium_DQ878232_2003,eur EUR-Belgium_DQ878233_2003,eur EUR-Belgium_EF563152_Unknown,eur EUR-Belgium_EF563153_Unknown,eur EUR-Belgium_EU248292_2003,eur EUR-Belgium_EU248294_2003,eur EUR-Belgium_EU248296_2003,eur EUR-Belgium_EU248297_2003,eur EUR-Belgium_EU248300_2003,eur EUR-Belgium_EU248302_2003,eur EUR-Belgium_EU248304_2003,eur EUR-Belgium_EU248306_2003,eur EUR-Belgium_EU248308_2003,eur EUR-Belgium_EU248309_2003,eur EUR-Belgium_EU248310_2003,eur EUR-Belgium_EU248312_2003,eur EUR-Belgium_EU248313_2003,eur EUR-Belgium_EU248314_2003,eur EUR-Belgium_EU248315_2003,eur EUR-Belgium_EU248316_2003,eur EUR-Belgium_EU248318_2003,eur EUR-Belgium_EU248319_2003,eur EUR-Belgium_EU248321_2003,eur EUR-Belgium_EU248324_2003,eur EUR-Belgium_EU248325_2003,eur EUR-Belgium_EU248326_2003,eur EUR-Belgium_EU248327_2003,eur EUR-Belgium_EU248328_2003,eur EUR-Belgium_EU248329_2003,eur EUR-Belgium_EU248330_2003,eur EUR-Belgium_EU248332_2003,eur EUR-Belgium_EU248338_2003,eur EUR-Belgium_EU248339_2003,eur EUR-Belgium_EU248340_2003,eur EUR-Belgium_EU248341_2003,eur EUR-Belgium_EU248342_2003,eur EUR-Belgium_EU248343_2003,eur EUR-Belgium_EU248345_2003,eur EUR-Belgium_EU248346_2003,eur EUR-Belgium_EU248349_2003,eur EUR-Belgium_EU248350_2003,eur EUR-Belgium_EU248352_2003,eur EUR-Belgium_EU248355_2003,eur EUR-Belgium_EU248358_2003,eur EUR-Belgium_EU248359_2003,eur EUR-Belgium_EU248360_2003,eur EUR-Belgium_EU248362_2003,eur EUR-Belgium_EU248364_2003,eur EUR-Belgium_EU248365_2003,eur EUR-Belgium_EU248367_2003,eur EUR-Belgium_EU248368_2003,eur EUR-Belgium_EU248370_2003,eur EUR-Belgium_EU248371_2003,eur EUR-Belgium_EU248372_2003,eur EUR-Belgium_EU248373_2003,eur EUR-Belgium_EU248375_2003,eur EUR-Belgium_EU248378_2003,eur EUR-Belgium_EU248379_2003,eur EUR-Belgium_EU248381_2003,eur EUR-Belgium_EU248382_2003,eur EUR-Belgium_EU248384_2003,eur EUR-Belgium_EU248385_2003,eur EUR-Belgium_EU248387_2003,eur EUR-Belgium_EU248390_2003,eur EUR-Belgium_EU248391_2003,eur EUR-Belgium_EU248392_2

rneher commented 5 years ago

thanks. I ran both country and continent model inferences without error. But there are so many countries that it does run out of regular characters. This might cause a problem in earlier numpy/python versions. Could you try to install treetime in python 3 and see whether this fixes it? I should also warn you that a model with ~100 countries is unlikely to be very well constrained by the data.

antoine4ucsd commented 5 years ago

Thanks ! I will try with python 3 and let you know how it works. Best, a

On Jan 27, 2019, at 5:47 AM, Richard Neher notifications@github.com wrote:

thanks. I ran both country and continent model inferences without error. But there are so many countries that it does run out of regular characters. This might cause a problem in earlier numpy/python versions. Could you try to install treetime in python 3 and see whether this fixes it? I should also warn you that a model with ~100 countries is unlikely to be very well constrained by the data.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or mute the thread.

antoine4ucsd commented 5 years ago

you were right! it is a python 2 issue… Can I extract (R code?) the location node for a list of cluster (defined in the taxon name with the prefix CLUSTERxxSIZExx_ or maybe using a list_file? a

On Jan 27, 2019, at 5:47 AM, Richard Neher notifications@github.com<mailto:notifications@github.com> wrote:

thanks. I ran both country and continent model inferences without error. But there are so many countries that it does run out of regular characters. This might cause a problem in earlier numpy/python versions. Could you try to install treetime in python 3 and see whether this fixes it? I should also warn you that a model with ~100 countries is unlikely to be very well constrained by the data.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHubhttps://github.com/neherlab/treetime_examples/issues/2#issuecomment-457919412, or mute the threadhttps://github.com/notifications/unsubscribe-auth/ARpT56i9AbnOHqB_lPLC45MpnLtb-q6vks5vHa4AgaJpZM4aTrSr.

rneher commented 5 years ago

not sure I understand, these are taxa with an assigned location, right? so why do you want to infer their location? But if you run the command with --confidence, you'll get a long list that contains the inference for every node including the inferred probability of being in a certain state. Only that you probably badly oversample some parts of the world which will result in overly confidence estimates.

antoine4ucsd commented 5 years ago

what I would like is to grab the ancestral location for some clusters . see for example below… I identified a cluster “CLUSTER161SIZE3’ and the 'ancestral location' is mexicostate Does that make sense?

a

Antoine Chaillon M.D., Ph.D. Center For Aids Research (CFAR) Division of Infectious Diseases, UCSD & VA San Diego Healthcare System Stein Clinical Research Building #325 University of California San Diego 9500 Gilman Drive La Jolla CA, 92093-0679 (+33) 76-779-4224

On Jan 27, 2019, at 9:02 AM, Richard Neher <notifications@github.com mailto:notifications@github.com> wrote:

not sure I understand, these are taxa with an assigned location, right? so why do you want to infer their location? But if you run the command with --confidence, you'll get a long list that contains the inference for every node including the inferred probability of being in a certain state. Only that you probably badly oversample some parts of the world which will result in overly confidence estimates.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/neherlab/treetime_examples/issues/2#issuecomment-457935132, or mute the thread https://github.com/notifications/unsubscribe-auth/ARpT5-cOUv8MKjW-ZAZ0TKYKNur1iaojks5vHduQgaJpZM4aTrSr.

rneher commented 5 years ago

I still don't understand. is CLUSTER161SIZE3 a tip or an internal node?

antoine4ucsd commented 5 years ago

Sorry - It is a prefix within the taxon name. I previously identified a list of ‘clusters’ and each taxon to which they belong to have a suffix like ‘CLUSTERxxSIZEyy.

a

On Jan 27, 2019, at 11:56 PM, Richard Neher notifications@github.com wrote:

I still don't understand. is CLUSTER161SIZE3 a tip or an internal node?

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or mute the thread.

rneher commented 5 years ago

So you want the common ancestor of all tips named ‘CLUSTERxxSIZEyy'? That is something you could do in biopython or similar.

antoine4ucsd commented 5 years ago

I think I was able to figure this out. Thanks !

a

On Jan 30, 2019, at 5:54 AM, Richard Neher notifications@github.com wrote:

So you want the common ancestor of all tips named ‘CLUSTERxxSIZEyy'? That is something you could do in biopython or similar.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or mute the thread.

antoine4ucsd commented 5 years ago

Hi Richard is there a cmd line to only infer trees with branch lengths in time units (I am not interested in ancestral reconstruction for now).

I tried treetime --tree TREE.newick --dates DATES.csv --aln SEQ.fasta It is working but it takes a lot of time (35k sequences…) I also tried with the —clock option but the output tree is not in time units. treetime clock --tree TREE.newick --dates DATES.csv --aln SEQ.fasta --reroot least-squares

thanks ++ a

rneher commented 5 years ago

35k??? I am not sure. You could try treedater by Volz and Frost. In treetime, you can speed things up a bit by using --branch-length-mode input and --sequence-length ## (## where ## is the length of your sequence alignment) instead of the alignment. But it'll still take a while.

antoine4ucsd commented 5 years ago

thank you Richard! I finally end up with a set of 8k after some subsetting. Your simplified command was ~30% faster. It seems to work pretty well (and much faster than LSD or Treedater) a

On Feb 28, 2019, at 11:42 PM, Richard Neher <notifications@github.com mailto:notifications@github.com> wrote:

35k??? I am not sure. You could try treedater by Volz and Frost. In treetime, you can speed things up a bit by using --branch-length-mode input and --sequence-length ## (## where ## is the length of your sequence alignment) instead of the alignment. But it'll still take a while.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/neherlab/treetime_examples/issues/2#issuecomment-468573868, or mute the thread https://github.com/notifications/unsubscribe-auth/ARpT543cTpRbb7xCGEFZdSHZ_3-A0WGiks5vSNn1gaJpZM4aTrSr.

rneher commented 5 years ago

glad it worked!