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neicnordic
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Bifrost
This is a service that enables job submissions to secure compute platforms from the open internet
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Added functions and output file encryption
#50
oskarvid
closed
4 years ago
0
Added constants for two key files
#49
oskarvid
closed
4 years ago
0
Added compute job failure handling
#48
oskarvid
closed
4 years ago
0
Added job failure handling and some bug fixes
#47
oskarvid
closed
4 years ago
0
Added main function, turned jobs into functions
#46
oskarvid
closed
4 years ago
0
Fixed wrong copy paths and removed print statements
#45
oskarvid
closed
4 years ago
0
Minor cleanup and a bug fix
#44
oskarvid
closed
4 years ago
0
Added failure handling to decrypt function
#43
oskarvid
closed
4 years ago
0
Using the ConfigYml class for imputation, added failure handling to d…
#42
oskarvid
closed
4 years ago
0
Removed unused import
#41
oskarvid
closed
4 years ago
0
Code cleanup and jobtype name fail handling
#40
oskarvid
closed
4 years ago
0
Added script failure if subprocess fails
#39
oskarvid
closed
4 years ago
0
transfer single files instead of a folder
#38
radmilak
closed
4 years ago
0
Impute
#37
oskarvid
closed
4 years ago
0
Added yaml clearing function
#36
oskarvid
closed
4 years ago
0
Added back the pubKey line in the config file
#35
oskarvid
closed
4 years ago
0
Changed env to python3 from python3.8
#34
oskarvid
closed
4 years ago
0
Added required to some arguments
#33
oskarvid
closed
4 years ago
0
Changed impute jobs to use the yaml class
#32
oskarvid
closed
4 years ago
0
Added yaml clearing function
#31
oskarvid
closed
4 years ago
0
Impute
#30
oskarvid
closed
4 years ago
0
Upgrade to python 3
#29
oskarvid
closed
4 years ago
0
upgraded to python 3
#28
oskarvid
closed
4 years ago
0
"No supported encryption method" when decrypting scz inputs
#27
oskarvid
opened
4 years ago
0
fix constant name
#26
radmilak
closed
4 years ago
0
update readme with how to submit a scz job
#25
radmilak
closed
4 years ago
0
fix paths after merging
#24
radmilak
closed
4 years ago
2
refactoring and add some more SCZ-related code
#23
radmilak
closed
4 years ago
1
Split by chromosome script
#22
oskarvid
closed
4 years ago
2
Get access to compute VM on TSD
#21
oskarvid
closed
4 years ago
2
Decide where to transfer input files
#20
oskarvid
closed
4 years ago
1
Encrypting input files before transfer
#19
oskarvid
closed
4 years ago
1
Config file reading script
#18
oskarvid
closed
4 years ago
3
Job submit script
#17
oskarvid
closed
4 years ago
4
Figure out how to integrate local-EGA
#16
oskarvid
opened
4 years ago
0
Log all events
#15
oskarvid
closed
4 years ago
1
Start job
#14
oskarvid
closed
4 years ago
2
Verify file integrity
#13
oskarvid
closed
4 years ago
0
Log cron job 1 events in a log file
#12
oskarvid
closed
4 years ago
1
Initiate file transfer of input files and yaml file to uniquely named directory
#11
oskarvid
closed
4 years ago
3
Verify that files have been transferred successfully by verifying md5sum
#10
oskarvid
closed
4 years ago
1
Write M3 documentation
#9
oskarvid
closed
4 years ago
1
Write M2 documentation
#8
oskarvid
closed
4 years ago
2
Write M1 documentation
#7
oskarvid
closed
4 years ago
2
Verify md5sum and start job
#6
oskarvid
closed
4 years ago
0
Cron job for file transfer to compute/scratch disk
#5
oskarvid
closed
4 years ago
2
Figure out how to use ARC for the final full scale Nordic release
#4
oskarvid
closed
4 years ago
1
Job config file fields
#3
oskarvid
closed
4 years ago
5
Query submission requirements
#2
oskarvid
closed
4 years ago
2
**Automation**
#1
oskarvid
closed
4 years ago
1
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