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neksa / mutagene

Python library and package for mutational analysis
https://www.ncbi.nlm.nih.gov/projects/mutagene/
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motif search command line #31

Closed anna-panchenko closed 4 years ago

anna-panchenko commented 4 years ago

example in "motif search --help" is not working:

mutagene motif --infile --input-format sample1.maf -f MAF --genome hg19 --motif 'C[A>T]' --strand A

It should be:

mutagene motif --infile sample1.maf -f MAF --genome hg19 --motif 'C[A>T]' --strand A

We should have an example with the significant motif matches.