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neksa / mutagene

Python library and package for mutational analysis
https://www.ncbi.nlm.nih.gov/projects/mutagene/
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provides no list of cohorts #55

Open anna-panchenko opened 3 years ago

anna-panchenko commented 3 years ago

$ mutagene fetch cohorts --list WARNING Looks like the file has been downloaded already: cohorts.tar.gz

neksa commented 3 years ago

The issue is that for fetch cohorts COSMIC is the default source, so it's literally interpreted as fetch cohorts COSMIC --list

a workaround is:

mutagene fetch cohorts MSKCC --list