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nel-lab / mesmerize-core

High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
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V0.1 dev -> master #155

Closed kushalkolar closed 1 year ago

kushalkolar commented 1 year ago
  1. lazy arrays for CNMF, #140
  2. lazy arrays for non-memmapable tiff file #144 #150
  3. updated tests since memmap naming changed in latest caiman, see https://github.com/flatironinstitute/CaImAn/pull/1026/commits/361ff253cbd46a05e7ebbc2df1fedfb9bb3125a8
  4. misc cleanup
  5. more informative @warning_experimental()
  6. remove pims as hard dep
  7. remove matplotlib references
  8. cleanup dependencies, remove pytest, pydata theme, separate environment.yml for rtd
kushalkolar commented 1 year ago

Windows tests are failing because it's using caiman v1.9.12 and the memmap names are diff, merging anyways. Linux tests failing because of error at 16th decimal place :shrug: