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nel-lab / mesmerize-core

High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
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caimanmanager step of installation instructions is incorrect on macOS #227

Closed rly closed 1 year ago

rly commented 1 year ago

Step 4 of the installation instructions in the README says:

  1. Install caimanmanager 
    caimanmanager.py install

On my Mac M1 using the default zsh shell, running this returns:

zsh: command not found: caimanmanager.py

Looking at https://github.com/flatironinstitute/CaImAn#step-2-download-code-samples-and-data-sets, I believe the correct command for all OS should be:

caimanmanager install

as of CaImAn v1.9.16

The later source code blocks should also be updated.