search

nel-lab / mesmerize-core

High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
Other
60 stars 15 forks source link

How to get z score of raw and deltaF/F #248

Closed qweasdf1354 closed 11 months ago

qweasdf1354 commented 11 months ago

Hi, author! you teach me how to get the deltaF/F, i got it. However, i notice there can extract z score, I do not understand how to got it. could you help me?

kushalkolar commented 11 months ago

See the docstring for cnmf.viz, you can give different keyword arguments to temporal data options

On Fri, Nov 10, 2023, 01:35 qweasdf1354 @.***> wrote:

Hi, author! you teach me how to get the deltaF/F, i got it. However, i notice there can extract z score, I do not understand how to got it. could you help me?

— Reply to this email directly, view it on GitHub https://github.com/nel-lab/mesmerize-core/issues/248, or unsubscribe https://github.com/notifications/unsubscribe-auth/ACHXXRE7VANMYJA2VVWVR2TYDXDMNAVCNFSM6AAAAAA7FWMKBSVHI2DSMVQWIX3LMV43ASLTON2WKOZRHE4DOMBQHAYDANY . You are receiving this because you are subscribed to this thread.Message ID: @.***>

qweasdf1354 commented 11 months ago

Thanks, I will read it soon!

kushalkolar commented 11 months ago

This will give you what people call "zscore" https://tslearn.readthedocs.io/en/latest/gen_modules/preprocessing/tslearn.preprocessing.TimeSeriesScalerMeanVariance.html

qweasdf1354 commented 11 months ago

Thanks!