search

nel-lab / mesmerize-core

High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
Other
58 stars 15 forks source link

Movie path and caiman path can be different? #257

Closed zhouyi0812 closed 9 months ago

zhouyi0812 commented 9 months ago

Hello! I wonder if it is possible to set the movie path and caiman path different, as I have another drive to save all my data. So this is my parent path: mc.set_parent_raw_data_path("C:/Users/yyizhou/caiman_data/") and this is my movie path: movie_path="D:/Calcium_Imaging/d28/004PBd28_B2_G3_1_00d00h00m.tif" So there is an error when I run high pass filter: TypeError: Graphic.init() got an unexpected keyword argument 'vmin_vmax_sliders'

So I am not sure if it is possible. Thank you!!

zhouyi0812 commented 9 months ago

Just want to update, I think it could set two path, I just used the old demo to test it so get the error.

kushalkolar commented 9 months ago

Input movie paths must be somewhere within the parent raw data path. The new demo nb describes this better

On Mon, Dec 4, 2023, 14:45 Yi Zhou @.***> wrote:

Closed #257 https://github.com/nel-lab/mesmerize-core/issues/257 as completed.

— Reply to this email directly, view it on GitHub https://github.com/nel-lab/mesmerize-core/issues/257#event-11143648092, or unsubscribe https://github.com/notifications/unsubscribe-auth/ACHXXRD2WEASW6MCT34UNT3YHYR6LAVCNFSM6AAAAABAGQLLNWVHI2DSMVQWIX3LMV45UABCJFZXG5LFIV3GK3TUJZXXI2LGNFRWC5DJN5XDWMJRGE2DGNRUHAYDSMQ . You are receiving this because you are subscribed to this thread.Message ID: @.***>