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nel-lab / mesmerize-core

High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
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Issue with cnmfe notebook with fastplotlib #261

Closed JohnStout closed 7 months ago

JohnStout commented 8 months ago

Running through mescore per/corr image display section in your CNMFE notebook. Running into this error. Checked this code with an older version of mescore and this isn't an issue. Looks like it's related to fastplotlib?

Thank you! -John

Screenshot 2023-12-23 at 3 26 57 PM
kushalkolar commented 8 months ago

https://github.com/fastplotlib/fastplotlib/releases/tag/v0.1.0.a16

On Sat, Dec 23, 2023, 15:37 John Stout, Ph.D. @.***> wrote:

Running through mescore per/corr image display section in your CNMFE notebook. Running into this error. Checked this code with an older version of mescore and this isn't an issue. Looks like it's related to fastplotlib?

Thank you! -John Screenshot.2023-12-23.at.3.26.57.PM.png (view on web) https://github.com/nel-lab/mesmerize-core/assets/46092030/f78bd60d-9151-43e5-b061-d3fd806ef85e

— Reply to this email directly, view it on GitHub https://github.com/nel-lab/mesmerize-core/issues/261, or unsubscribe https://github.com/notifications/unsubscribe-auth/ACHXXRCTXSTQ5CMUXG6O6LLYK46HXAVCNFSM6AAAAABBBARULSVHI2DSMVQWIX3LMV43ASLTON2WKOZSGA2TIOBZG4ZTQOA . You are receiving this because you are subscribed to this thread.Message ID: @.***>

kushalkolar commented 8 months ago

Sorry for the succint reply, my availability is spotty during the holidays. If you replace "controllers": [[iw_corr_pnr... with "controller_types": [[iw_corr_pnr... in line 14 it should work.

We usually make note of major breaking changes in the release notes as linked above.

JohnStout commented 8 months ago

Thanks Kushal, happy holidays! -John

On Sun, Dec 24, 2023 at 1:44 AM Kushal Kolar @.***> wrote:

Sorry for the succint reply, my availability is spotty during the holidays. If you replace "controllers": [[iw_corr_pnr... with "controller_types": [[iw_corr_pnr... in line 14 it should work.

We usually make note of major breaking changes in the release notes as linked above.

— Reply to this email directly, view it on GitHub https://github.com/nel-lab/mesmerize-core/issues/261#issuecomment-1868445751, or unsubscribe https://github.com/notifications/unsubscribe-auth/AK7U57UH77NV5G2PCBTV5ETYK7FMHAVCNFSM6AAAAABBBARULSVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTQNRYGQ2DKNZVGE . You are receiving this because you authored the thread.Message ID: @.***>