extract mcorr movie as tiff

[Jorgenhoyer]

Is there a way to extract the motion corrected movies and save them as tiff?

[kushalkolar]

What are you actually trying to do? The memmaps behave just like any other numpy array and are much nicer to work with than tiff files (lazy loading, etc.)

[Jorgenhoyer]

Yes, thats true. But I need the mcorr video for use outside of mesmerize.

[kushalkolar]

You can write to a tiff file using the tifffile library, create a TiffWriter object and write to it frame-by-frame. I don't have it off the top of my head but it's easy to figure out :)

[Jorgenhoyer]

Ok, thanks:)