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nel-lab / mesmerize-core

High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
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IndexError #281

Closed Frank497 closed 8 months ago

Frank497 commented 8 months ago

Hi, I was learning to use mesmerize-core and I tried to replace the demo image stack with my own experimental data (which is a 39 1024 1024 16bit grayscale tiff image). I encounter an error while applying motion correction. I had tried to use tiffit convert on the tif image however it did not fix this. 螢幕擷取畫面 2024-03-06 153222 螢幕擷取畫面 2024-03-06 153137 螢幕擷取畫面 2024-03-06 153118

kushalkolar commented 8 months ago

You need a minimum of 1000 frames for motion correction, not sure why you're trying only 39 frames.

Frank497 commented 8 months ago

Ok, I'll try it with other data then. The 39 frame is a subset of my volume calcium imaging data, I'm not sure if mesmerize supports 3D time-series thus trying it out on a subset first.