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nel-lab / mesmerize-core

High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
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Motion correction output F order only #296

Closed zhouyi0812 closed 4 months ago

zhouyi0812 commented 4 months ago

Hello!

I looped a bunch of movie for motion correction and found that the output is 'F' order only. But when I use Caiman, it is 'C' order mmap file is being used.

How should I deal with it? It is possible to get C order for output? Thank you!

kushalkolar commented 4 months ago

Motion correction uses F-order because that's the fastest way to access frames, CNMF uses C-order because that's the fastest way to access individual pixels.