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Repository for the NeMO Analytics project.
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"External resource links" need to be changed in NeMO profile view #126

Open carlocolantuoni opened 4 years ago

carlocolantuoni commented 4 years ago

currently these "External resource links" include: Cortecon UCSC Cell browser BrianSpan

these links should be associated with individual data sets - not genes, as all the other "External resource links" are.

i think the best place for these would be in the individual dataset pull down menus where we list "analyze", "curate" etc. - we could list "webiste" that links to the individual data sets viewing site, just as the "publication" link in this same pulldown menu goes to the PMID for that specific data set.

these are the data sets that connect to the links currently in the 'External resource links":

Cortecon - hESC (H9) in vitro neural differentiation timecourse (CORTECON; van de Leemput et al. 2014, Neuron)

UCSC Cell browser - Human Fetal Cortex scRNAseq (Nowakowski et al. 2017 Science)

BrianSpan - BrainSpanBulkDevo

hertzron commented 4 years ago

Can you think of additional helpful links?

On Sun, Jul 26, 2020 at 11:40 PM Carlo Colantuoni notifications@github.com wrote:

currently these "External resource links" include: Cortecon UCSC Cell browser BrianSpan

these links should be associated with individual data sets - not genes, as all the other "External resource links" are.

i think the best place for these would be in the individual dataset pull down menus where we list "analyze", "curate" etc. - we could list "webiste" that links to the individual data sets viewing site, just as the "publication" link in this same pulldown menu goes to the PMID for that specific data set.

these are the data sets that connect to the links currently in the 'External resource links":

Cortecon - hESC (H9) in vitro neural differentiation timecourse (CORTECON; van de Leemput et al. 2014, Neuron)

UCSC Cell browser - Human Fetal Cortex scRNAseq (Nowakowski et al. 2017 Science)

BrianSpan - BrainSpanBulkDevo

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seth-ament commented 4 years ago

Carlo, I like having links at the top of the page to resources like BrainSpan, but I agree it would be good to have additional links specific to certain datasets. One possibility that doesn't require any coding is to paste the URL into the Info field within the dropdown you mentioned. Since this is only relevant to a few datasets, that may be the best option.

hertzron commented 4 years ago

In the gEAR we have some links appear only if there are data for them for the specific gene. Would this help?

I prefer we keep all external links in one place, or the site gets very confusing.

On Mon, Jul 27, 2020 at 9:30 AM Seth Ament notifications@github.com wrote:

Carlo, I like having links at the top of the page to resources like BrainSpan, but I agree it would be good to have additional links specific to certain datasets. One possibility that doesn't require any coding is to paste the URL into the Info field within the dropdown you mentioned. Since this is only relevant to a few datasets, that may be the best option.

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seth-ament commented 4 years ago

I think the kinds of links Carlo is talking about are really just a way of tracking provenance, equivalent to the PubMed ID. The example of this that's going to be very common for NeMO is to provide a link to the location of the data on the NeMO Archive.