margrietpalm
commented
5 months ago Running the tests with Python 3.12 with numpy fails.
Collecting numpy==1.24.*
Downloading numpy-1.24.4.tar.gz (10.9 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 10.9/10.9 MB 108.2 MB/s eta 0:00:00
Installing build dependencies: started
Installing build dependencies: finished with status 'done'
Getting requirements to build wheel: started
Getting requirements to build wheel: finished with status 'error'
error: subprocess-exited-with-error
× Getting requirements to build wheel did not run successfully.
│ exit code: 1
╰─> [33 lines of output]
Traceback (most recent call last):
File "/opt/hostedtoolcache/Python/3.12.2/x64/lib/python3.12/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 353, in <module>
main()
File "/opt/hostedtoolcache/Python/3.12.2/x64/lib/python3.12/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 335, in main
json_out['return_val'] = hook(**hook_input['kwargs'])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/opt/hostedtoolcache/Python/3.12.2/x64/lib/python3.12/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 112, in get_requires_for_build_wheel
backend = _build_backend()
^^^^^^^^^^^^^^^^
File "/opt/hostedtoolcache/Python/3.12.2/x64/lib/python3.12/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 77, in _build_backend
obj = import_module(mod_path)
^^^^^^^^^^^^^^^^^^^^^^^
File "/opt/hostedtoolcache/Python/3.12.2/x64/lib/python3.12/importlib/__init__.py", line 90, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "<frozen importlib._bootstrap>", line 1387, in _gcd_import
File "<frozen importlib._bootstrap>", line 1[36](https://github.com/nens/threedigrid-builder/actions/runs/7912954928/job/21599646276#step:6:37)0, in _find_and_load
File "<frozen importlib._bootstrap>", line 1310, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed
File "<frozen importlib._bootstrap>", line 1[38](https://github.com/nens/threedigrid-builder/actions/runs/7912954928/job/21599646276#step:6:39)7, in _gcd_import
File "<frozen importlib._bootstrap>", line 1360, in _find_and_load
File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 935, in _load_unlocked
File "<frozen importlib._bootstrap_external>", line 995, in exec_module
File "<frozen importlib._bootstrap>", line [48](https://github.com/nens/threedigrid-builder/actions/runs/7912954928/job/21599646276#step:6:49)8, in _call_with_frames_removed
File "/tmp/pip-build-env-q0y6q96e/overlay/lib/python3.12/site-packages/setuptools/__init__.py", line 16, in <module>
import setuptools.version
File "/tmp/pip-build-env-q0y6q96e/overlay/lib/python3.12/site-packages/setuptools/version.py", line 1, in <module>
import pkg_resources
File "/tmp/pip-build-env-q0y6q96e/overlay/lib/python3.12/site-packages/pkg_resources/__init__.py", line 21[72](https://github.com/nens/threedigrid-builder/actions/runs/7912954928/job/21599646276#step:6:73), in <module>
register_finder(pkgutil.ImpImporter, find_on_path)
^^^^^^^^^^^^^^^^^^^
AttributeError: module 'pkgutil' has no attribute 'ImpImporter'. Did you mean: 'zipimporter'?
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
error: subprocess-exited-with-error
× Getting requirements to build wheel did not run successfully.
│ exit code: 1
╰─> See above for output.
note: This error originates from a subprocess, and is likely not a problem with pip.
Error: Process completed with exit code 1.This is a known issue with python 3.12: https://github.com/numpy/numpy/issues/23808
This can be fixed by upgrading numpy to 1.26. and setuptools to 69.. However, building the fortran part fails with those dependencies (without clear errors during building):
Run pytest
ImportError while loading conftest '/home/runner/work/threedigrid-builder/threedigrid-builder/threedigrid_builder/tests/conftest.py'.
threedigrid_builder/__init__.py:1: in <module>
from .application import * # NOQA
threedigrid_builder/application.py:17: in <module>
from threedigrid_builder.grid import Grid, QuadTree
threedigrid_builder/grid/__init__.py:22: in <module>
from .quadtree import * # NOQA
threedigrid_builder/grid/quadtree.py:[11](https://github.com/nens/threedigrid-builder/actions/runs/7913597226/job/21601581991#step:7:12): in <module>
from .fgrid import m_cells, m_quadtree
threedigrid_builder/grid/fgrid/__init__.py:1: in <module>
from ._fgrid import m_cells, m_quadtree # NOQA
E ModuleNotFoundError: No module named 'threedigrid_builder.grid.fgrid._fgrid'
Error: Process completed with exit code 4.Seems that the installer no longer supports what we do:
Running command python setup.py bdist_wheel
/opt/hostedtoolcache/Python/3.12.2/x64/lib/python3.12/site-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!
********************************************************************************
Requirements should be satisfied by a PEP 517 installer.
If you are using pip, you can try `pip install --use-pep517`.
********************************************************************************
!!
dist.fetch_build_eggs(dist.setup_requires)https://github.com/nens/threedigrid-builder/actions/runs/7916215007/job/21609611018
caspervdw
daanvaningen
The current test matrix tests with Python version 3.7 up to 3.11, corresponding to package versions in the years 2018-2022