Closed leendertvanwolfswinkel closed 1 month ago
Same data as #243
If I do
water_levels_23 = customized_results_admin.nodes.filter(id__eq=23).timeseries(start_time=0, end_time=last_timestamp).s1
I get this error:
--------------------------------------------------------------------------- OSError Traceback (most recent call last) Cell In[19], line 1 ----> 1 water_levels_23 = customized_results_admin.nodes.filter(id__eq=23).timeseries(start_time=0, end_time=last_timestamp).s1 File C:\ProgramData\anaconda3\envs\threedi_dev\Lib\site-packages\threedigrid\orm\base\models.py:227, in Model.__getattribute__(self, attr_name) 223 return attr.get_value(self._datasource, attr_name) 225 # Use the get function to retrieve the computed/filtered 226 # value for the ArrayField with name: 'name' --> 227 return super().__getattribute__("get_filtered_field_value")(attr_name) 229 # Default behaviour, return the attribute from superclass 230 return attr File C:\ProgramData\anaconda3\envs\threedi_dev\Lib\site-packages\threedigrid\orm\base\models.py:204, in Model.get_filtered_field_value(self, field_name, ts_filter, lookup_index, subset_index) 200 def get_filtered_field_value( 201 self, field_name, ts_filter=None, lookup_index=None, subset_index=None 202 ): 203 # Redirect via datasource --> 204 return self._datasource.get_filtered_field_value( 205 self, field_name, ts_filter, lookup_index, subset_index 206 ) File C:\ProgramData\anaconda3\envs\threedi_dev\Lib\site-packages\threedigrid\admin\h5py_datasource.py:62, in H5pyGroup.get_filtered_field_value(self, model, field_name, ts_filter, lookup_index, subset_index) 53 if field_name in model.Meta.composite_field_insert_values: 54 kwargs.update( 55 { 56 "insert_value": model.Meta.composite_field_insert_values[ (...) 59 } 60 ) ---> 62 value = model.get_field_value(field_name, **kwargs) 64 # Transform the base_filter by prepending slice(None) to 65 # match the dimensionality of the nparray_dict[key].shape 66 # (...) 76 # Return a numpy array with None as only element when 77 # the value is None. 78 if value is None or value.size == 0: File C:\ProgramData\anaconda3\envs\threedi_dev\Lib\site-packages\threedigrid\orm\base\models.py:169, in Model.get_field_value(self, field_name, **kwargs) 163 update_dict["insert_value"] = self.Meta.composite_field_insert_values[ 164 field_name 165 ] 167 kwargs.update(update_dict) --> 169 return self._meta.get_field(field_name).get_value( 170 self._datasource, field_name, **kwargs 171 ) File C:\ProgramData\anaconda3\envs\threedi_dev\Lib\site-packages\threedigrid\orm\base\fields.py:174, in TimeSeriesCompositeArrayField.get_value(self, datasource, name, **kwargs) 172 if isinstance(timeseries_filter_to_use, np.ndarray): 173 if len(source.shape) > 1: --> 174 values.append(source[timeseries_filter_to_use, :]) 175 elif source.size == timeseries_filter_to_use.size: 176 values.append(source[timeseries_filter_to_use]) File h5py\_objects.pyx:54, in h5py._objects.with_phil.wrapper() File h5py\_objects.pyx:55, in h5py._objects.with_phil.wrapper() File C:\ProgramData\anaconda3\envs\threedi_dev\Lib\site-packages\h5py\_hl\dataset.py:758, in Dataset.__getitem__(self, args, new_dtype) 756 if self._fast_read_ok and (new_dtype is None): 757 try: --> 758 return self._fast_reader.read(args) 759 except TypeError: 760 pass # Fall back to Python read pathway below File h5py\_selector.pyx:376, in h5py._selector.Reader.read() OSError: Can't synchronously read data (inflate() failed)
I did the same simulation again after the staging release and with the new files I do not have this issue
Same data as #243
If I do
I get this error: