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neo4j / graph-data-science

Source code for the Neo4j Graph Data Science library of graph algorithms.
https://neo4j.com/docs/graph-data-science/current/
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Unable to install #199

Closed lavkan closed 2 years ago

lavkan commented 2 years ago

I am trying to install this package on macOS Big Sur (11.6.3). I followed the instructions as specified in the page. When I run sdk install java 11.0.13-tem my machine complains:

Stop! java 11.0.13-tem is not available. Possible causes:
 * 11.0.13-tem is an invalid version
 * java binaries are incompatible with your platform
 * java has not been released yet

and as a result ./gradlew check fails. I was able to successfully install this in macOS Catalina. So I suppose the java binaries are incompatible with the platform. Kindly let me know what should I do to successfully install this package in my machine.

Thank you very much.

FlorentinD commented 2 years ago

Hello @lavkan, you can also use another distribution of Java 11, 11.0.13-tem is only a recommendation. To see the available distributions on your machine, you can use sdk list java. There was a recent response by @Mats-SX about Java distributions on macOS (see https://github.com/neo4j/graph-data-science/pull/193#issuecomment-1128496908).

lavkan commented 2 years ago

Hello @FlorentinD,

I did try with the latest versions, eg. 11.0.15 - as suggested by sdk list java - still no luck. I will see the comment #193 and update this space.

lavkan commented 2 years ago

@FlorentinD Update: I downloaded the repo once again, and installed java 17.0.3-tem and 11.0.15 that were available for my OS successfully using sdk (sdk install java 17.0.3-tem and sdk install java 11.0.15-tem), but yet ./gradlew check failed to build. I am pasting the messages I get below. Please let me know.

./gradlew check

Task :algo:test

GraphSageModelTrainerTest > batchesPerIteration(double, boolean, int) > org.neo4j.gds.embeddings.graphsage.GraphSageModelTrainerTest.batchesPerIteration(double, boolean, int)[1] FAILED org.opentest4j.AssertionFailedError at GraphSageModelTrainerTest.java:333 WARNING: An illegal reflective access operation has occurred WARNING: Illegal reflective access by org.apache.commons.lang3.reflect.FieldUtils (file:/Users/lavanyakannan/.gradle/caches/modules-2/files-2.1/org.apache.commons/commons-lang3/3.12.0/c6842c86792ff03b9f1d1fe2aab8dc23aa6c6f0e/commons-lang3-3.12.0.jar) to field sun.nio.ch.FileChannelImpl.positionLock WARNING: Please consider reporting this to the maintainers of org.apache.commons.lang3.reflect.FieldUtils WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations WARNING: All illegal access operations will be denied in a future release Results: FAILURE (3446 tests, 3444 successes, 1 failures, 1 skipped)

3446 tests completed, 1 failed, 1 skipped

Task :algo:test FAILED

FAILURE: Build failed with an exception.

Deprecated Gradle features were used in this build, making it incompatible with Gradle 8.0.

You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins.

See https://docs.gradle.org/7.4.2/userguide/command_line_interface.html#sec:command_line_warnings

BUILD FAILED in 38s 74 actionable tasks: 1 executed, 73 up-to-date

FlorentinD commented 2 years ago

Hello @Iavkan, thats good news! This GraphSage test is rather recent and not tested on a MacOS, you can simply ignore it (by adding a @Disabled annotation locally).

I will look into making this test stable :)

FlorentinD commented 2 years ago

@lavkan could you get the project to build?

I reworked the test to be more robust and I would close this issue if your problem is resolved :)

s1ck commented 2 years ago

Closing. @lavkan please reopen if the problem still exists.