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neo4j / graph-data-science

Source code for the Neo4j Graph Data Science library of graph algorithms.
https://neo4j.com/docs/graph-data-science/current/
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WARN [o.n.k.a.p.GlobalProcedures] Failed to load #266

Closed liv-daliberti closed 1 year ago

liv-daliberti commented 1 year ago

Describe the bug

I cannot seem to install neo4j 5.5 and neo4j graph data science 2.3.1. I receive a huge warning message dominated by java.lang.NoClassDefFoundError messages.

To Reproduce install neo4j 5.5 and place graph data science plugin 3.1.0 within /var/lib/neo4j/plugin

wget -O - https://packages.adoptium.net/artifactory/api/gpg/key/public | sudo apt-key add - echo "deb https://packages.adoptium.net/artifactory/deb $(awk -F= '/^VERSION_CODENAME/{print$2}' /etc/os-release) main" | sudo tee /etc/apt/sources.list.d/adoptium.list apt-get update && apt-get install temurin-17-jdk -y

curl -fsSL https://debian.neo4j.com/neotechnology.gpg.key |gpg --dearmor -o /usr/share/keyrings/neo4j.gpg && echo "deb [signed-by=/usr/share/keyrings/neo4j.gpg] https://debian.neo4j.com/ stable 5" | tee -a /etc/apt/sources.list.d/neo4j.list RUN apt update && apt-get install neo4j=1:5.5.0 -y

GDS version: 2.3.1 Neo4j version: 5.5 Operating system: (Ubuntu 20.04

Expected behavior I expect a clean install with a debug that doesn't have issues with java.lang.NoClassDefFoundError

Additional context 2023-04-04 20:24:48.459+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.ClusterExporterBuilderCatalog from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/kernel/enterprise/api/security/EnterpriseLoginContext 2023-04-04 20:24:48.460+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.ClusterExporterBuilderCatalog$DelegatingEnterpriseLoginContext from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/kernel/enterprise/api/security/EnterpriseLoginContext 2023-04-04 20:24:48.463+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.core.write.CypherRelationshipStreamExporter from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/kernel/enterprise/api/security/EnterpriseLoginContext 2023-04-04 20:24:48.463+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.core.write.CypherNodeLabelExporterBuilder from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/kernel/enterprise/api/security/EnterpriseLoginContext 2023-04-04 20:24:48.464+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.core.write.DefaultQueryRunner from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/kernel/enterprise/api/security/EnterpriseLoginContext 2023-04-04 20:24:48.464+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.core.write.CypherRelationshipStreamExporterBuilder from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/kernel/enterprise/api/security/EnterpriseLoginContext 2023-04-04 20:24:48.465+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.core.write.CypherRelationshipExporterBuilder from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/kernel/enterprise/api/security/EnterpriseLoginContext 2023-04-04 20:24:48.468+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.core.write.CypherNodePropertyExporterBuilder from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/kernel/enterprise/api/security/EnterpriseLoginContext 2023-04-04 20:24:48.468+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.ClusterExporterBuilderCatalog$ExporterBuilderCreator from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/kernel/enterprise/api/security/EnterpriseLoginContext 2023-04-04 20:24:48.744+0000 WARN [o.n.k.a.p.GlobalProcedures] Use of https://github.com/procedure(deprecatedBy) without @deprecated in gds.graph.streamRelationshipProperty 2023-04-04 20:24:48.748+0000 WARN [o.n.k.a.p.GlobalProcedures] Use of https://github.com/procedure(deprecatedBy) without @deprecated in gds.graph.streamRelationshipProperties 2023-04-04 20:24:48.763+0000 WARN [o.n.k.a.p.GlobalProcedures] Use of https://github.com/procedure(deprecatedBy) without @deprecated in gds.graph.writeNodeProperties 2023-04-04 20:24:48.822+0000 WARN [o.n.k.a.p.GlobalProcedures] Use of https://github.com/procedure(deprecatedBy) without @deprecated in gds.graph.streamNodeProperty 2023-04-04 20:24:48.825+0000 WARN [o.n.k.a.p.GlobalProcedures] Use of https://github.com/procedure(deprecatedBy) without @deprecated in gds.graph.streamNodeProperties 2023-04-04 20:24:48.833+0000 WARN [o.n.k.a.p.GlobalProcedures] Use of https://github.com/procedure(deprecatedBy) without @deprecated in gds.graph.writeRelationship 2023-04-04 20:24:48.838+0000 WARN [o.n.k.a.p.GlobalProcedures] Use of https://github.com/procedure(deprecatedBy) without @deprecated in gds.graph.removeNodeProperties 2023-04-04 20:24:48.858+0000 WARN [o.n.k.a.p.GlobalProcedures] Use of https://github.com/procedure(deprecatedBy) without @deprecated in gds.graph.deleteRelationships 2023-04-04 20:24:50.056+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load org.neo4j.gds.compat._44.InMemoryVersionCheck from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: org/neo4j/storageengine/api/StoreVersionCheck$Result 2023-04-04 20:24:50.057+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load org.neo4j.gds.compat._44.InMemoryCountsStore from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: org/neo4j/counts/CountsStore 2023-04-04 20:24:50.058+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load org.neo4j.gds.compat._44.InMemoryStorageEngineImpl from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: org/neo4j/counts/CountsStore 2023-04-04 20:24:50.063+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load org.neo4j.gds.compat._51.InMemoryStorageEngineImpl from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: org/neo4j/counts/CountsStore 2023-04-04 20:24:50.071+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load org.neo4j.gds.compat._51.InMemoryCountsStoreImpl from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: org/neo4j/counts/CountsStore 2023-04-04 20:24:50.075+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load org.neo4j.gds.compat._52.InMemoryStorageEngineImpl from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: org/neo4j/storageengine/api/CommandsToApply 2023-04-04 20:24:50.282+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load org.neo4j.gds.compat._44.BoltTransactionRunnerImpl from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: org/neo4j/bolt/runtime/statemachine/impl/BoltAdapterSubscriber 2023-04-04 20:24:50.286+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load org.neo4j.gds.compat._44.TestLogImpl from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: org/neo4j/logging/Logger 2023-04-04 20:24:50.287+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load org.neo4j.gds.compat._44.BoltTransactionRunnerImpl$1 from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: org/neo4j/bolt/runtime/statemachine/impl/BoltAdapterSubscriber 2023-04-04 20:24:50.554+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.handler.codec.spdy.SpdyHeaderBlockJZlibEncoder from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/com/jcraft/jzlib/Deflater 2023-04-04 20:24:50.648+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.handler.ssl.JettyNpnSslEngine from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/org/eclipse/jetty/npn/NextProtoNego$Provider 2023-04-04 20:24:50.658+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.handler.ssl.JettyAlpnSslEngine$ClientEngine from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/org/eclipse/jetty/alpn/ALPN$Provider 2023-04-04 20:24:50.665+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.handler.ssl.util.BouncyCastleSelfSignedCertGenerator from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/org/bouncycastle/cert/X509v3CertificateBuilder 2023-04-04 20:24:50.666+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.handler.ssl.ConscryptAlpnSslEngine$BufferAdapter from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/org/conscrypt/AllocatedBuffer 2023-04-04 20:24:50.670+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.handler.ssl.ConscryptAlpnSslEngine$ClientEngine from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/org/conscrypt/BufferAllocator 2023-04-04 20:24:50.672+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.handler.ssl.JettyAlpnSslEngine$ClientEngine$1 from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/org/eclipse/jetty/alpn/ALPN$ClientProvider 2023-04-04 20:24:50.673+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.handler.ssl.JettyAlpnSslEngine$ServerEngine from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/org/eclipse/jetty/alpn/ALPN$Provider 2023-04-04 20:24:50.675+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.handler.ssl.ConscryptAlpnSslEngine from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/org/conscrypt/BufferAllocator 2023-04-04 20:24:50.676+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.handler.ssl.JettyAlpnSslEngine$ServerEngine$1 from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/org/eclipse/jetty/alpn/ALPN$ServerProvider 2023-04-04 20:24:50.677+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.handler.ssl.JettyNpnSslEngine$1 from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/org/eclipse/jetty/npn/NextProtoNego$ServerProvider 2023-04-04 20:24:50.679+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.handler.ssl.ConscryptAlpnSslEngine$ServerEngine$1 from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/org/conscrypt/HandshakeListener 2023-04-04 20:24:50.682+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.handler.ssl.ConscryptAlpnSslEngine$BufferAllocatorAdapter from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/org/conscrypt/BufferAllocator 2023-04-04 20:24:50.687+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.handler.ssl.JettyNpnSslEngine$2 from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/org/eclipse/jetty/npn/NextProtoNego$ClientProvider 2023-04-04 20:24:50.694+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.handler.ssl.ConscryptAlpnSslEngine$ServerEngine from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/org/conscrypt/BufferAllocator 2023-04-04 20:24:50.699+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.handler.ssl.ConscryptAlpnSslEngine$ClientEngine$1 from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/org/conscrypt/HandshakeListener 2023-04-04 20:24:50.700+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.handler.ssl.BouncyCastlePemReader from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/org/bouncycastle/openssl/jcajce/JcaPEMKeyConverter 2023-04-04 20:24:53.194+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.com.fasterxml.jackson.databind.ext.DOMDeserializer$DocumentDeserializer from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/org/w3c/dom/Document 2023-04-04 20:24:53.195+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.com.fasterxml.jackson.databind.ext.DOMDeserializer$NodeDeserializer from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/org/w3c/dom/Node 2023-04-04 20:24:53.195+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.com.fasterxml.jackson.databind.ext.DOMDeserializer from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/org/w3c/dom/Document 2023-04-04 20:24:53.196+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.com.fasterxml.jackson.databind.ext.DOMSerializer from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/org/w3c/dom/Node 2023-04-04 20:24:53.869+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.org.reflections.vfs.JbossFile from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/org/jboss/vfs/VirtualFile 2023-04-04 20:24:53.871+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.org.reflections.vfs.JbossDir from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/org/jboss/vfs/VirtualFile 2023-04-04 20:24:53.880+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.org.reflections.serializers.XmlSerializer from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/org/dom4j/Element 2023-04-04 20:24:54.951+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.handler.codec.compression.JZlibDecoder from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/com/jcraft/jzlib/Inflater 2023-04-04 20:24:54.953+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.handler.codec.marshalling.ChannelBufferByteOutput from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/org/jboss/marshalling/ByteOutput 2023-04-04 20:24:54.958+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.handler.codec.marshalling.CompatibleMarshallingDecoder from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/org/jboss/marshalling/ByteInput 2023-04-04 20:24:54.958+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.handler.codec.marshalling.ChannelBufferByteInput from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/org/jboss/marshalling/ByteInput 2023-04-04 20:24:54.958+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.handler.codec.marshalling.DefaultUnmarshallerProvider from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/org/jboss/marshalling/Unmarshaller 2023-04-04 20:24:54.960+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.handler.codec.compression.JZlibEncoder from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/com/jcraft/jzlib/Deflater 2023-04-04 20:24:54.962+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.handler.codec.compression.LzfDecoder from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/com/ning/compress/lzf/ChunkDecoder 2023-04-04 20:24:54.963+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.handler.codec.marshalling.ThreadLocalMarshallerProvider from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/org/jboss/marshalling/Marshaller 2023-04-04 20:24:54.964+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.handler.codec.compression.BrotliDecoder from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/com/aayushatharva/brotli4j/decoder/DecoderJNI$Wrapper 2023-04-04 20:24:54.966+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.handler.codec.marshalling.ThreadLocalUnmarshallerProvider from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/org/jboss/marshalling/Unmarshaller 2023-04-04 20:24:54.966+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.handler.codec.marshalling.LimitingByteInput from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/org/jboss/marshalling/ByteInput 2023-04-04 20:24:54.968+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.handler.codec.protobuf.ProtobufEncoderNano from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/com/google/protobuf/nano/MessageNano 2023-04-04 20:24:54.968+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.handler.codec.marshalling.CompatibleMarshallingEncoder from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/org/jboss/marshalling/ByteOutput 2023-04-04 20:24:54.969+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.handler.codec.compression.BrotliEncoder from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/com/aayushatharva/brotli4j/encoder/Encoder$Parameters 2023-04-04 20:24:54.970+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.handler.codec.marshalling.DefaultMarshallerProvider from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/org/jboss/marshalling/Marshaller 2023-04-04 20:24:54.973+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.handler.codec.compression.ZlibUtil from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/com/jcraft/jzlib/Inflater 2023-04-04 20:24:54.975+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.handler.codec.marshalling.ContextBoundUnmarshallerProvider from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/org/jboss/marshalling/Unmarshaller 2023-04-04 20:24:54.976+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.handler.codec.marshalling.UnmarshallerProvider from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/org/jboss/marshalling/Unmarshaller 2023-04-04 20:24:54.976+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.handler.codec.compression.StandardCompressionOptions from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/com/aayushatharva/brotli4j/encoder/Encoder$Parameters 2023-04-04 20:24:54.978+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.handler.codec.compression.LzmaFrameEncoder from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: lzma/sdk/lzma/Encoder 2023-04-04 20:24:54.979+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.handler.codec.marshalling.MarshallingDecoder from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/org/jboss/marshalling/ByteInput 2023-04-04 20:24:54.980+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.handler.codec.marshalling.MarshallingEncoder from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/org/jboss/marshalling/ByteOutput 2023-04-04 20:24:54.981+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.handler.codec.compression.LzfEncoder from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/com/ning/compress/lzf/ChunkEncoder 2023-04-04 20:24:54.982+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.handler.codec.compression.BrotliOptions from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/com/aayushatharva/brotli4j/encoder/Encoder$Parameters 2023-04-04 20:24:54.991+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.handler.codec.marshalling.MarshallerProvider from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/org/jboss/marshalling/Marshaller 2023-04-04 20:24:54.992+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.handler.codec.compression.BrotliEncoder$Writer from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/com/aayushatharva/brotli4j/encoder/BrotliEncoderChannel 2023-04-04 20:24:55.145+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.util.internal.Hidden$NettyBlockHoundIntegration from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: reactor/blockhound/integration/BlockHoundIntegration 2023-04-04 20:24:55.146+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.util.internal.logging.Log4JLogger from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/org/apache/log4j/Priority 2023-04-04 20:24:55.158+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.util.internal.logging.CommonsLogger from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/org/apache/commons/logging/Log 2023-04-04 20:24:55.168+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.util.internal.Hidden$NettyBlockHoundIntegration$1 from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: reactor/blockhound/integration/BlockHoundIntegration 2023-04-04 20:24:55.172+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.io.netty.util.internal.logging.Log4J2Logger from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/org/apache/logging/log4j/spi/ExtendedLoggerWrapper 2023-04-04 20:24:55.623+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.javassist.util.HotSwapper from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: com/neo4j/gds/shaded/com/sun/jdi/request/EventRequest 2023-04-04 20:24:55.781+0000 WARN [o.n.k.a.p.GlobalProcedures] Failed to load com.neo4j.gds.shaded.org.ejml.ops.MatrixIO$MflAccess$IO from plugin jar /var/lib/neo4j/plugins/neo4j-graph-data-science-2.3.1.jar: java.lang.NoClassDefFoundError: us/hebi/matlab/mat/types/MatFile 2023-04-04 20:24:55.919+0000 INFO [o.n.s.s.s.UserSecurityGraphComponent] Performing postInitialization step for component 'security-users' with version 4 and status CURRENT 2023-04-04 20:24:55.919+0000 INFO [o.n.s.s.s.UserSecurityGraphComponent] Updating the initial password in component 'security-users' 2023-04-04 20:24:55.930+0000 INFO [o.n.d.d.DatabaseLifecycles] Creating 'DatabaseId{1d5227d3[neo4j]}'. 2023-04-04 20:24:55.933+0000 INFO [o.n.d.d.DatabaseLifecycles] Starting 'DatabaseId{1d5227d3[neo4j]}'.

DarthMax commented 1 year ago

Hej @liv-daliberti, thank you for reporting the issue. You say that you are having problems installing GDS, even with those warnings, did you try to run a GDS procedure after starting Neo4j? It looks like your database starts and GDS should be available. You can confirm this by running CALL gds.version()

The warnings you see are a problem that we are aware of. They are caused by the fact that we ship a single GDS plugin jar that is compatible with many Neo4j versions. Unfortunately there are some issues with this approach and the way the Neo4j class loader works and loads plugins. However these warnings do not usually impede the operation of Neo4j.

We will try to remove or minimize those warnings in the future.

Best, Max

liv-daliberti commented 1 year ago

Thank you so much for this update -- it turns out the problem was unrelated to the warnings and that they were a red herring. I really appreciate your response, and I look forward to future developments from your team.

Thank you