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neoanthill / neoANT-HILL

Integrated tool for prediction of potential neoantigens
Apache License 2.0
7 stars 2 forks source link

the link http://bioinformatics-brazil.org/ is broken. #3

Open balamp opened 4 years ago

balamp commented 4 years ago

Dear Author,

Thanks for your wonderful software. I am sure it will be useful to the community.

Please fix the following issue.

the link http://bioinformatics-brazil.org/ is broken. Therefore the last 2 lines in the docker file doesn't get executed. wget of the data from this website fails and docker build stops.

Let me know what can be done in this case? Is there an alternative link that I can hard code in the docker file replacing this current link?

let me know.

Thanks and regards, Bala Research Scientist IBN, Nanos, Singapore

yiguangshun commented 4 years ago

Dear Ana,

Thanks for responding to me over email. Very much appreciate your help regarding this. At our Institute, we tried to run the docker build again. It runs through 30 steps, but gets stuck at the same place where it was before. I think the weblink, still dont work.

Here is the error message we are getting. Please see below. ##################### Step 30/32 : RUN wget http://bioinformatics-brazil.org/~carolcoelho/neoanthill/protein_refseq.fasta -O /home/biodocker/neoanthill/data/protein_refseq.fasta ---> Running in bce2120f168a --2020-03-30 11:20:01-- http://bioinformatics-brazil.org/~carolcoelho/neoanthill/protein_refseq.fasta Resolving bioinformatics-brazil.org (bioinformatics-brazil.org)... failed: No address associated with hostname. wget: unable to resolve host address 'bioinformatics-brazil.org' The command '/bin/sh -c wget http://bioinformatics-brazil.org/~carolcoelho/neoanthill/protein_refseq.fasta -O /home/biodocker/neoanthill/data/protein_refseq.fasta' returned a non-zero code: 4 #####################################

Many thanks for your help.

Regards, Guangshun Yi

guilherme-araujo commented 4 years ago

Please add www to the links (http://www.bioinformatics-brazil.org) The file has been fixed on the repository, you can pull the latest changes with "git pull" command on your local repository.