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neperfepx / neper

Polycrystal generation and meshing
http://neper.info
GNU General Public License v3.0
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Cannot install the neper version 4.4.0 properly #405

Closed fzw9381 closed 2 years ago

fzw9381 commented 2 years ago

When I installed neper and tried to make test, some parts failed.

89% tests passed, 35 tests failed out of 307

Total Test time (real) = 259.42 sec

The following tests FAILED: 114 - M/cl (Failed) 115 - M/cl_expr (Failed) 118 - M/clmin (Failed) 119 - M/clratio (Failed) 120 - M/dim (Failed) 121 - M/dim2 (Failed) 122 - M/dim_expr (Failed) 123 - M/faset (Failed) 126 - M/interface (Failed) 127 - M/interface2 (Failed) 128 - M/interface3 (Failed) 129 - M/mesh2dalgo_dela (Failed) 130 - M/mesh2dalgo_fron (Failed) 131 - M/mesh2dalgo_mead (Failed) 132 - M/mesh2dalgo_netg (Failed) 133 - M/mesh3dalgo_netggmne (Failed) 134 - M/mesh3dalgo_netggmsh (Failed) 135 - M/mesh3dalgo_netgnetg (Failed) 136 - M/meshing (Failed) 138 - M/meshqualdisexpr (Failed) 139 - M/meshqualexpr (Failed) 140 - M/meshqualmin (Failed) 141 - M/nset1 (Failed) 142 - M/nset2 (Failed) 143 - M/nset3 (Failed) 144 - M/order (Failed) 145 - M/order_dim2 (Failed) 150 - M/part_dim2 (Failed) 151 - M/pl (Failed) 152 - M/rcl (Failed) 153 - M/rcl_expr (Failed) 156 - M/remesh1 (Failed) 157 - M/remesh2 (Failed) 158 - M/remesh3 (Failed) 170 - M/tesr_dim2 (Failed) Errors while running CTest make: *** [Makefile:107：test] Error 8

cpfem@cpfem:~/neper-4.4.0/src/build$ sudo make install [ 26%] Built target scotch [ 31%] Built target nlopt [ 31%] Built target scotcherrexit [ 31%] Built target scotcherr [ 32%] Built target muparser [ 36%] Built target orilib [ 37%] Built target openGJKlib [ 41%] Built target ut [ 61%] Built target neper_t [ 80%] Built target neut [ 90%] Built target neper_m [ 97%] Built target neper_v [100%] Built target neper_s [100%] Built target neper Install the project... -- Install configuration: "Release" -- Installing: /usr/local/bin/neper -- Set runtime path of "/usr/local/bin/neper" to "" -- Installing: /usr/share/bash-completion/completions/neper -- Installing: /usr/local/lib/pkgconfig/nlopt.pc -- Installing: /usr/local/include/nlopt.h -- Installing: /usr/local/include/nlopt.hpp -- Installing: /usr/local/include/nlopt.f -- Installing: /usr/local/share/man/man3/nlopt.3 -- Installing: /usr/local/share/man/man3/nlopt_minimize.3 -- Installing: /usr/local/share/man/man3/nlopt_minimize_constrained.3

rquey commented 2 years ago

Did you install Gmsh?

fzw9381 commented 2 years ago

Did you install Gmsh?

yes, I use:

sudo apt install libgmsh-dev

and successfully installed the Gmsh.

fzw9381 commented 2 years ago

I tried version 4.3.1, some error happens.

and I tried 4.2.0, there is no such error.

fzw9381 commented 2 years ago

I tried again, and there is still the same error. I believe this is a bug since version 4.3.0

rquey commented 2 years ago

I'm quite sure there is a problem with your Gmsh, but please run this:

gmsh --version
neper -T -n 2
neper -M n2-id1.tess

and post the result: terminal output in the body of the message and output mesh file (if any) as attachment..

EDIT: I can reproduce the bug; let me look into it.

fzw9381 commented 2 years ago

files.zip

all the message and files are in the attachment.

fzw9381 commented 2 years ago

cpfem@cpfem:~/neper_test$ gmsh --version 4.4.1

fzw9381 commented 2 years ago

cpfem@cpfem:~/neper_test$ neper -T -n 2

======================== N e p e r ======================= Info : A software package for polycrystal generation and meshing. Info : Version 4.4.0 Info : Built with: gsl|muparser|opengjk|openmp|nlopt|libscotch (full) Info : Running on 4 threads. Info : https://neper.info Info : Copyright (C) 2003-2022, and GNU GPL'd, by Romain Quey. Info : No initialization file found (/home/cpfem/.neperrc'). Info : --------------------------------------------------------------- Info : MODULE -T loaded with arguments: Info : [ini file] (none) Info : [com line] -n 2 Info : --------------------------------------------------------------- Info : Reading input data... Info : Creating domain... Info : Creating tessellation... Info : - Setting seeds... Info : - Generating crystal orientations... Info : - Running tessellation... Info : Writing results... Info : [o] Writing filen2-id1.tess'... Info : [o] Wrote file `n2-id1.tess'. Info : Elapsed time: 0.022 secs.

fzw9381 commented 2 years ago

cpfem@cpfem:~/neper_test$ neper -M n2-id1.tess

======================== N e p e r ======================= Info : A software package for polycrystal generation and meshing. Info : Version 4.4.0 Info : Built with: gsl|muparser|opengjk|openmp|nlopt|libscotch (full) Info : Running on 4 threads. Info : https://neper.info Info : Copyright (C) 2003-2022, and GNU GPL'd, by Romain Quey. Info : No initialization file found (/home/cpfem/.neperrc'). Info : --------------------------------------------------------------- Info : MODULE -M loaded with arguments: Info : [ini file] (none) Info : [com line] n2-id1.tess Info : --------------------------------------------------------------- Info : Reading input data... Info : - Reading arguments... Info : Loading input data... Info : - Loading tessellation... Info : [i] Parsing filen2-id1.tess'... Info : [i] Parsed file n2-id1.tess'. Info : Meshing... Info : - Preparing... (cl = 0.3969) 100% Info : - 0D meshing... 100% Info : - 1D meshing... 100% Info : - 2D meshing... 100% (0.44|0.8/100%| 0%| 0%) Info : - Fixing 2D-mesh pinches... Info : - 3D meshing... 100% (0.89|0.89/100%| 0%| 0%) Info : Searching nsets and fasets... Info : Writing mesh results... Info : - Preparing mesh... Info : - Mesh properties: Info : > Node number: 90 Info : > Elt number: 232 Info : > Mesh volume: 1.000 Info : - Writing mesh... Info : [o] Writing filen2-id1.msh'... Info : [o] Wrote file `n2-id1.msh'. Info : Elapsed time: 2.916 secs.

rquey commented 2 years ago

@fzw9381: Please do not post multiple messages - people receive a notification each time, and we aim at keeping this forum low trafiic - high quality. Edit your message instead.

I'll post a fix shortly.

rquey commented 2 years ago

It is only that you are testing Neper with a Gmsh version lower than the one used to build the reference test files, and your Gmsh version generates slightly different output files. You can read about this here.

Either use the latest Gmsh version, 4.9.4, and re-run the tests, or keep your current configuration and re-run the tests in Minimal mode:

cmake -DBUILD_TESTING_MODE=Minimal ..
ctest
RoadToDream commented 6 months ago

For those who is confused with why neper can't pass the M series test, it may be due to the msh file generated from gmsh will have a $MeshVersion section at the end. Which confuses function neut_mesh_fscanf_msh. 

$MeshVersion
2.2.3
$EndMeshVersion

gmsh version is 4.12.0