OpenMP problems on Apple M1 hardware

[d3e5560]

Compiling NEPR of a macintosh Powerbook Pro Apple M1 Max chipset, OS=Ventura 13.0.1. The error is encountered when compiling the code, following these instructions (https://neper.info/doc/introduction.html#installing-neper) exactly.

There appears to be some problem with accessing the libraries for OpenMP appropriately in the new instances installed by XCode. The offending bit of code is when attempting to access .

I have tried many work-arounds, each of them failing to resolve the problem. I am hoping that the code authors are routinely compiling on a macintosh (they appear quite mac savvy), and perhaps have some resolution for this compilation failure. Any help that can be provided would be most appreciated.

Full "make" output appears below.

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neut/CMakeFiles/neut.dir/neut_odf/neut_odf1.cpp.o [ 77%] Building C object neut/CMakeFiles/neut.dir/neut_prim/neut_prim.c.o [ 78%] Building C object neut/CMakeFiles/neut.dir/neut_sim/neut_sim_fprintf/neut_sim_fprintf2.c.o [ 78%] Building C object neut/CMakeFiles/neut.dir/neut_fepxsim/neut_fepxsim_op/neut_fepxsim_op.c.o [ 78%] Building C object neut/CMakeFiles/neut.dir/neut_sim/neut_sim_fprintf/neut_sim_fprintf1.c.o [ 78%] Building CXX object neut/CMakeFiles/neut.dir/neut_odf/neut_odf3.cpp.o [ 78%] Building C object neut/CMakeFiles/neut.dir/neut_fepxsim/neut_fepxsim_fscanf/neut_fepxsim_fscanf1.c.o [ 78%] Building CXX object neut/CMakeFiles/neut.dir/neut_odf/neut_odf2.cpp.o In file included from /Users/woodbd/codes/neper/src/neut/neut_odf/neut_odf1.cpp:5: /Users/woodbd/codes/neper/src/neut/neut_odf/neutodf.h:5:17: warning: using directive refers to implicitly-defined namespace 'std' using namespace std; ^ In file included from /Users/woodbd/codes/neper/src/neut/neut_odf/neut_odf2.cpp:5: /Users/woodbd/codes/neper/src/neut/neut_odf/neutodf.h:5:17: warning: using directive refers to implicitly-defined namespace 'std' using namespace std; ^ In file included from /Users/woodbd/codes/neper/src/neut/neut_odf/neut_odf3.cpp:5: /Users/woodbd/codes/neper/src/neut/neut_odf/neutodf.h:5:17: warning: using directive refers to implicitly-defined namespace 'std' using namespace std; ^ /Users/woodbd/codes/neper/src/neut/neut_mesh/neut_mesh_fprintf/neut_mesh_fprintf_bcs/neut_mesh_fprintf_bcs1.c:19:7: warning: variable 'bcqty' set but not used [-Wunused-but-set-variable] int bcqty = 0; ^ 1 warning generated. In file included from /Users/woodbd/codes/neper/src/neut/neut_seedset/neut_seedset2.cpp:6: In file included from /Users/woodbd/codes/neper/src/neut/neut_structs/neut_nfcloudstruct.hpp:3: /Users/woodbd/codes/neper/src/contrib/nanoflann/nanoflann.hpp:1477:36: warning: definition of implicit copy constructor for 'KDTreeSingleIndexDynamicAdaptor<nanoflann::L2_SimpleAdaptor<double, NFCLOUD>, NFCLOUD, 3>' is deprecated because it has a user-provided copy assignment operator [-Wdeprecated-copy-with-user-provided-copy] KDTreeSingleIndexDynamicAdaptor operator=( const KDTreeSingleIndexDynamicAdaptor_& rhs ) { ^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX13.0.sdk/usr/include/c++/v1/memory/allocator.h:154:28: note: in implicit copy constructor for 'nanoflann::KDTreeSingleIndexDynamicAdaptor_<nanoflann::L2_Simple_Adaptor<double, NFCLOUD>, NFCLOUD, 3>' first required here ::new ((void*)__p) _Up(_VSTD::forward<_Args>(args)...); ^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX13.0.sdk/usr/include/c++/v1/memory/allocatortraits.h:290:13: note: in instantiation of function template specialization 'std::allocator<nanoflann::KDTreeSingleIndexDynamicAdaptor<nanoflann::L2_SimpleAdaptor<double, NFCLOUD>, NFCLOUD, 3>>::construct<nanoflann::KDTreeSingleIndexDynamicAdaptor<nanoflann::L2_SimpleAdaptor<double, NFCLOUD>, NFCLOUD, 3>, const nanoflann::KDTreeSingleIndexDynamicAdaptor<nanoflann::L2_Simple_Adaptor<double, NFCLOUD>, NFCLOUD, 3> &>' requested here a.construct(p, _VSTD::forward<_Args>(args)...); ^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX13.0.sdk/usr/include/c++/v1/vector:1085:25: note: in instantiation of function template specialization 'std::allocatortraits<std::allocator<nanoflann::KDTreeSingleIndexDynamicAdaptor<nanoflann::L2_SimpleAdaptor<double, NFCLOUD>, NFCLOUD, 3>>>::construct<nanoflann::KDTreeSingleIndexDynamicAdaptor<nanoflann::L2_SimpleAdaptor<double, NFCLOUD>, NFCLOUD, 3>, const nanoflann::KDTreeSingleIndexDynamicAdaptor<nanoflann::L2_Simple_Adaptor<double, NFCLOUD>, NFCLOUD, 3> &, void>' requested here alloc_traits::construct(this->__alloc(), _VSTD::toaddress(pos), x); ^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX13.0.sdk/usr/include/c++/v1/vector:1178:9: note: in instantiation of member function 'std::vector<nanoflann::KDTreeSingleIndexDynamicAdaptor<nanoflann::L2_Simple_Adaptor<double, NFCLOUD>, NFCLOUD, 3>>::construct_at_end' requested here construct_atend(n, x); ^ /Users/woodbd/codes/neper/src/contrib/nanoflann/nanoflann.hpp:1755:30: note: in instantiation of member function 'std::vector<nanoflann::KDTreeSingleIndexDynamicAdaptor<nanoflann::L2_Simple_Adaptor<double, NFCLOUD>, NFCLOUD, 3>>::vector' requested here std::vector index_(treeCount, my_kd_tree_t(dim /dim/, dataset, treeIndex, index_params)); ^ /Users/woodbd/codes/neper/src/contrib/nanoflann/nanoflann.hpp:1785:4: note: in instantiation of member function 'nanoflann::KDTreeSingleIndexDynamicAdaptor<nanoflann::L2_Simple_Adaptor<double, NFCLOUD>, NFCLOUD, 3>::init' requested here init(); ^ /Users/woodbd/codes/neper/src/neut/neut_seedset/neut_seedset2.cpp:161:21: note: in instantiation of member function 'nanoflann::KDTreeSingleIndexDynamicAdaptor<nanoflann::L2_Simple_Adaptor<double, NFCLOUD>, NFCLOUD, 3>::KDTreeSingleIndexDynamicAdaptor' requested here (pnf_tree) = new NFTREE (3, pnf_cloud); ^ In file included from /Users/woodbd/codes/neper/src/neut/neut_mesh/neut_mesh_geom/neut_mesh_geom1.cpp:5: In file included from /Users/woodbd/codes/neper/src/neut/neut_mesh/neut_mesh_geom/neut_meshgeom.h:12: In file included from /Users/woodbd/codes/neper/src/neut/neut_structs/neut_nfcloudstruct.hpp:3: /Users/woodbd/codes/neper/src/contrib/nanoflann/nanoflann.hpp:1477:36: warning: definition of implicit copy constructor for 'KDTreeSingleIndexDynamicAdaptor<nanoflann::L2_SimpleAdaptor<double, NFCLOUD>, NFCLOUD, 3>' is deprecated because it has a user-provided copy assignment operator [-Wdeprecated-copy-with-user-provided-copy] KDTreeSingleIndexDynamicAdaptor operator=( const KDTreeSingleIndexDynamicAdaptor_& rhs ) { ^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX13.0.sdk/usr/include/c++/v1/memory/allocator.h:154:28: note: in implicit copy constructor for 'nanoflann::KDTreeSingleIndexDynamicAdaptor_<nanoflann::L2_Simple_Adaptor<double, NFCLOUD>, NFCLOUD, 3>' first required here ::new ((void*)__p) _Up(_VSTD::forward<_Args>(args)...); ^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX13.0.sdk/usr/include/c++/v1/memory/allocatortraits.h:290:13: note: in instantiation of function template specialization 'std::allocator<nanoflann::KDTreeSingleIndexDynamicAdaptor<nanoflann::L2_SimpleAdaptor<double, NFCLOUD>, NFCLOUD, 3>>::construct<nanoflann::KDTreeSingleIndexDynamicAdaptor<nanoflann::L2_SimpleAdaptor<double, NFCLOUD>, NFCLOUD, 3>, const nanoflann::KDTreeSingleIndexDynamicAdaptor<nanoflann::L2_Simple_Adaptor<double, NFCLOUD>, NFCLOUD, 3> &>' requested here a.construct(p, _VSTD::forward<_Args>(args)...); ^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX13.0.sdk/usr/include/c++/v1/vector:1085:25: note: in instantiation of function template specialization 'std::allocatortraits<std::allocator<nanoflann::KDTreeSingleIndexDynamicAdaptor<nanoflann::L2_SimpleAdaptor<double, NFCLOUD>, NFCLOUD, 3>>>::construct<nanoflann::KDTreeSingleIndexDynamicAdaptor<nanoflann::L2_SimpleAdaptor<double, NFCLOUD>, NFCLOUD, 3>, const nanoflann::KDTreeSingleIndexDynamicAdaptor<nanoflann::L2_Simple_Adaptor<double, NFCLOUD>, NFCLOUD, 3> &, void>' requested here alloc_traits::construct(this->__alloc(), _VSTD::toaddress(pos), x); ^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX13.0.sdk/usr/include/c++/v1/vector:1178:9: note: in instantiation of member function 'std::vector<nanoflann::KDTreeSingleIndexDynamicAdaptor<nanoflann::L2_Simple_Adaptor<double, NFCLOUD>, NFCLOUD, 3>>::construct_at_end' requested here construct_atend(n, x); ^ /Users/woodbd/codes/neper/src/contrib/nanoflann/nanoflann.hpp:1755:30: note: in instantiation of member function 'std::vector<nanoflann::KDTreeSingleIndexDynamicAdaptor<nanoflann::L2_Simple_Adaptor<double, NFCLOUD>, NFCLOUD, 3>>::vector' requested here std::vector index_(treeCount, my_kd_tree_t(dim /dim/, dataset, treeIndex, index_params)); ^ /Users/woodbd/codes/neper/src/contrib/nanoflann/nanoflann.hpp:1785:4: note: in instantiation of member function 'nanoflann::KDTreeSingleIndexDynamicAdaptor<nanoflann::L2_Simple_Adaptor<double, NFCLOUD>, NFCLOUD, 3>::init' requested here init(); ^ /Users/woodbd/codes/neper/src/neut/neut_mesh/neut_mesh_geom/neut_mesh_geom1.cpp:1221:17: note: in instantiation of member function 'nanoflann::KDTreeSingleIndexDynamicAdaptor<nanoflann::L2_Simple_Adaptor<double, NFCLOUD>, NFCLOUD, 3>::KDTreeSingleIndexDynamicAdaptor' requested here nf_tree = new NFTREE (3, nf_cloud); ^ 1 warning generated. 1 warning generated. 1 warning generated. 1 warning generated. 1 warning generated. 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neper_m/CMakeFiles/neper_m.dir/nem_meshing/nem_meshing_0d/nem_meshing_0d1.c.o [ 91%] Building C object neper_m/CMakeFiles/neper_m.dir/nem_meshing/nem_meshing_1d/nem_meshing_1d2.c.o [ 91%] Building C object neper_v/CMakeFiles/neper_v.dir/nev_print/nev_print_pf/nev_print_pf_ptsprint_density/nev_print_pf_ptsprint_density2.c.o [ 92%] Building C object neper_v/CMakeFiles/neper_v.dir/nev_print/nev_print_png/nev_print_png_point/nev_print_png_point1.c.o [ 92%] Building C object neper_v/CMakeFiles/neper_v.dir/nev_print/nev_print_png/nev_print_png1.c.o [ 92%] Building C object neper_m/CMakeFiles/neper_m.dir/nem_transport/nem_transport3.c.o [ 92%] Building C object neper_v/CMakeFiles/neper_v.dir/nev_data/nev_data_csys/nev_data_csys1.c.o [ 92%] Building C object neper_m/CMakeFiles/neper_m.dir/nem_order/nem_order1.c.o [ 92%] Building C object neper_m/CMakeFiles/neper_m.dir/nem_meshing/nem_meshing_2d/nem_meshing_2d2.c.o [ 92%] Building C object neper_m/CMakeFiles/neper_m.dir/nem_meshing/nem_meshing_3d/nem_meshing_3d3.c.o [ 92%] Building C object neper_m/CMakeFiles/neper_m.dir/nem_transport/nem_transport1.c.o [ 92%] Building C object neper_s/CMakeFiles/neper_s.dir/nes_pproc/nes_pproc_entity/nes_pproc_entity_builtin/nes_pproc_entity_builtin2.c.o [ 92%] Building C object neper_m/CMakeFiles/neper_m.dir/nem_nsets/nem_nsets1.c.o [ 92%] Building C object neper_m/CMakeFiles/neper_m.dir/nem/nem_mesh_gmsh/nem_mesh_gmsh1.c.o [ 92%] Building C object neper_m/CMakeFiles/neper_m.dir/nem_input/nem_input2.c.o [ 92%] Building C object neper_v/CMakeFiles/neper_v.dir/nev_print/nev_print_pf/nev_print_pf_ptsprint_density/nev_print_pf_ptsprint_density3.c.o [ 92%] Building C object neper_v/CMakeFiles/neper_v.dir/nev_print/nev_print_png/nev_print_png_mesh/nev_print_png_mesh_0d/nev_print_png_mesh_0d1.c.o [ 92%] Building C object neper_v/CMakeFiles/neper_v.dir/nev_camera/nev_camera1.c.o [ 92%] Building C object neper_v/CMakeFiles/neper_v.dir/nev_print/nev_print_png/nev_print_png_mesh/nev_print_png_mesh_3d/nev_print_png_mesh_3d3.c.o [ 92%] Building C object neper_v/CMakeFiles/neper_v.dir/nev_load/nev_load2.c.o [ 92%] Building C object neper_m/CMakeFiles/neper_m.dir/nem_meshing_para/nem_meshing_para_faceproj/nem_meshing_para_faceproj1.c.o [ 92%] Building C object neper_v/CMakeFiles/neper_v.dir/nev_print/nev_print_init/nev_print_init4.c.o [ 92%] Building C object neper_m/CMakeFiles/neper_m.dir/nem_partition/nem_partition4.c.o [ 92%] Building C object neper_v/CMakeFiles/neper_v.dir/nev_print/nev_print_png/nev_print_png_mesh/nev_print_png_mesh_2d/nev_print_png_mesh_2d3.c.o [ 92%] Building C object neper_m/CMakeFiles/neper_m.dir/nem/nem_mesh_gmsh/nem_mesh_gmsh3.c.o [ 92%] Building C object neper_m/CMakeFiles/neper_m.dir/nem_meshing/nem_meshing_pinching/nem_meshing_pinching1.c.o [ 92%] Building C object neper_m/CMakeFiles/neper_m.dir/nem_sort/nem_sort1.c.o [ 92%] Building C object neper_m/CMakeFiles/neper_m.dir/nem_reconstruct/nem_reconstruct_tesr/nem_reconstruct_tesr2.c.o [ 93%] Building C object neper_s/CMakeFiles/neper_s.dir/nes_pproc/nes_pproc_entity/nes_pproc_entity_builtin/nes_pproc_entity_builtin3.c.o [ 93%] Building C object neper_v/CMakeFiles/neper_v.dir/nev_print/nev_print_png/nev_print_png_mesh/nev_print_png_mesh_2d/nev_print_png_mesh_2d2.c.o [ 93%] Building C object neper_v/CMakeFiles/neper_v.dir/nev_print/nev_print_tree/nev_print_tree1.c.o [ 93%] Building C object neper_m/CMakeFiles/neper_m.dir/nem_interface/nem_interface_dup/nem_interface_dup1.c.o [ 93%] Building C object neper_m/CMakeFiles/neper_m.dir/nem_elsets/nem_elsets2.c.o [ 93%] Building C object neper_v/CMakeFiles/neper_v.dir/nev_print/nev_print_png/nev_print_png_foot/nev_print_png_foot1.c.o [ 93%] Building C object neper_v/CMakeFiles/neper_v.dir/nev_data/nev_data_points/nev_data_points1.c.o [ 93%] Building C object neper_m/CMakeFiles/neper_m.dir/nem_meshing/nem_meshing_0d/nem_meshing_0d2.c.o [ 93%] Building C object neper_v/CMakeFiles/neper_v.dir/nev_include/nev_include1.c.o [ 93%] Building C object neper_v/CMakeFiles/neper_v.dir/nev_print/nev_print_init/nev_print_init2.c.o [ 93%] Building C object neper_v/CMakeFiles/neper_v.dir/nev_print/nev_print_scale/nev_print_scale1.c.o [ 93%] Building C object neper_v/CMakeFiles/neper_v.dir/nev_print/nev_print_png/nev_print_png_tess/nev_print_png_tess1.c.o [ 94%] Building C object neper_v/CMakeFiles/neper_v.dir/nev_print/nev_print_png/nev_print_png_mesh/nev_print_png_mesh_2d/nev_print_png_mesh_2d1.c.o [ 94%] Building C object neper_m/CMakeFiles/neper_m.dir/nem_nsets/nem_nsets2.c.o [ 94%] Building C object neper_m/CMakeFiles/neper_m.dir/nem_ori/nem_ori1.c.o [ 94%] Building C object neper_v/CMakeFiles/neper_v.dir/nev_print/nev_print_png/nev_print_png_header/nev_print_png_header1.c.o [ 94%] Building C object neper_v/CMakeFiles/neper_v.dir/nev_print/nev_print_scale/nev_print_scale2.c.o [ 94%] Building C object neper_v/CMakeFiles/neper_v.dir/nev_print/nev_print_vtk/nev_print_vtk2.c.o [ 94%] Building C object neper_v/CMakeFiles/neper_v.dir/nev_data/nev_data_tess/nev_data_tess2.c.o [ 94%] Building C object neper_s/CMakeFiles/neper_s.dir/nes_pproc/nes_pproc_entity/nes_pproc_entity_builtin/nes_pproc_entity_builtin1.c.o [ 94%] Building C object neper_m/CMakeFiles/neper_m.dir/nem_smoothing/nem_smoothing1.c.o [ 94%] Building C object neper_v/CMakeFiles/neper_v.dir/nev_print/nev_print_png/nev_print_png_tesr/nev_print_png_tesr1.c.o [ 94%] Building C object neper_m/CMakeFiles/neper_m.dir/nem_elsets/nem_elsets1.c.o [ 94%] Building C object neper_v/CMakeFiles/neper_v.dir/nev_print/nev_print_pf/nev_print_pf3.c.o [ 94%] Building C object neper_m/CMakeFiles/neper_m.dir/nem_cleaning/nem_cleaning1.c.o [ 94%] Building C object neper_m/CMakeFiles/neper_m.dir/nem/nem_mesh_gmsh/nem_mesh_gmsh2.c.o [ 94%] Building C object neper_m/CMakeFiles/neper_m.dir/nem_reconstruct/nem_reconstruct_mesh/nem_reconstruct_mesh1.c.o [ 94%] Building C object neper_m/CMakeFiles/neper_m.dir/neper_m.c.o [ 94%] Building C object neper_v/CMakeFiles/neper_v.dir/nev_print/nev_print_png/nev_print_png_mesh/nev_print_png_mesh_3d/nev_print_png_mesh_3d1.c.o [ 94%] Building C object neper_m/CMakeFiles/neper_m.dir/nem_smoothing/nem_smoothing2.c.o [ 94%] Building C object neper_v/CMakeFiles/neper_v.dir/nev_print/nev_print_png/nev_print_png_csys/nev_print_png_csys1.c.o [ 94%] Building C object neper_v/CMakeFiles/neper_v.dir/nev_print/nev_print_pf/nev_print_pf2.c.o [ 94%] Building C object neper_m/CMakeFiles/neper_m.dir/nem_meshing/nem_meshing_2d/nem_meshing_2d_face_mesh_gmsh/nem_meshing_2d_face_mesh_gmsh3.c.o [ 94%] Building C object neper_m/CMakeFiles/neper_m.dir/nem/nem_tess/nem_tess1.c.o [ 94%] Building C object neper_v/CMakeFiles/neper_v.dir/nev_povray/nev_povray1.c.o [ 94%] Building C object neper_m/CMakeFiles/neper_m.dir/nem_utils/nem_utils.c.o [ 94%] Building C object neper_m/CMakeFiles/neper_m.dir/nem_partition/nem_partition1.c.o [ 94%] Building C object neper_v/CMakeFiles/neper_v.dir/nev_print/nev_print_pf/nev_print_pf1.c.o [ 94%] Building C object neper_m/CMakeFiles/neper_m.dir/nem_partition/nem_partition3.c.o [ 94%] Building C object neper_m/CMakeFiles/neper_m.dir/nem_writemesh/nem_writemesh2.c.o [ 95%] Building C object neper_v/CMakeFiles/neper_v.dir/nev_print/nev_print_png/nev_print_png_mesh/nev_print_png_mesh_1d/nev_print_png_mesh_1d1.c.o [ 95%] Building C object neper_m/CMakeFiles/neper_m.dir/nem_transport/nem_transport2.c.o [ 96%] Building C object neper_m/CMakeFiles/neper_m.dir/nem/nem_tess/nem_tess3.c.o [ 97%] Building C object neper_m/CMakeFiles/neper_m.dir/nem_meshing/nem_meshing_3d/nem_meshing_3d2.c.o [ 97%] Building C object neper_m/CMakeFiles/neper_m.dir/nem_order/nem_order2.c.o [ 97%] Building C object neper_m/CMakeFiles/neper_m.dir/nem_transform/nem_transform2.c.o [ 98%] Building C object neper_m/CMakeFiles/neper_m.dir/nem_meshing_str/nem_meshing_str1.c.o [ 99%] Building C object neper_v/CMakeFiles/neper_v.dir/nev_print/nev_print_pf/nev_print_pf_ptsprint_density/nev_print_pf_ptsprint_density1.c.o [ 99%] Building C object neper_m/CMakeFiles/neper_m.dir/nem_meshing/nem_meshing_pinching/nem_meshing_pinching3.c.o [ 99%] Building C object neper_m/CMakeFiles/neper_m.dir/nem_meshing/nem_meshing_3d/nem_meshing_3d4.c.o [ 99%] Building C object neper_v/CMakeFiles/neper_v.dir/nev_print/nev_print_png/nev_print_png_mesh/nev_print_png_mesh1.c.o [ 99%] Building C object neper_v/CMakeFiles/neper_v.dir/nev_show/nev_show_point/nev_show_point1.c.o [ 99%] Building C object neper_v/CMakeFiles/neper_v.dir/nev_print/nev_print_utils/nev_print_utils1.c.o [100%] Building C object neper_m/CMakeFiles/neper_m.dir/nem/nem_tess/nem_tess2.c.o [100%] Building C object neper_m/CMakeFiles/neper_m.dir/nem_sort/nem_sort2.c.o [100%] Building C object neper_v/CMakeFiles/neper_v.dir/nev_print/nev_print_vtk/nev_print_vtk1.c.o [100%] Building C object neper_v/CMakeFiles/neper_v.dir/nev_print/nev_print_png/nev_print_png_mesh/nev_print_png_mesh_3d/nev_print_png_mesh_3d2.c.o [100%] Building C object neper_m/CMakeFiles/neper_m.dir/nem_partition/nem_partition2.c.o [100%] Building C object neper_v/CMakeFiles/neper_v.dir/nev_print/nev_print_png/nev_print_png_mesh/nev_print_png_mesh_nodes/nev_print_png_mesh_nodes1.c.o [100%] Building C object neper_m/CMakeFiles/neper_m.dir/nem_meshing_para/nem_meshing_para_cl/nem_meshing_para_cl1.c.o In file included from /Users/woodbd/codes/neper/src/neper_m/nem_meshing/nem_meshing_2d/nem_meshing_2d_face_mesh_gmsh/nem_meshing_2d_face_mesh_gmsh2.c:5: /Users/woodbd/codes/neper/src/neper_m/nem_meshing/nem_meshing_2d/nem_meshing_2d_face_mesh_gmsh/nem_meshing_2d_face_meshgmsh.h:14:9: fatal error: 'omp.h' file not found

include

    ^~~~~~~

In file included from /Users/woodbd/codes/neper/src/neper_m/nem_meshing/nem_meshing_2d/nem_meshing_2d_face_mesh_gmsh/nem_meshing_2d_face_mesh_gmsh1.c:5: /Users/woodbd/codes/neper/src/neper_m/nem_meshing/nem_meshing_2d/nem_meshing_2d_face_mesh_gmsh/nem_meshing_2d_face_meshgmsh.h:14:9: fatal error: 'omp.h' file not found

include

    ^~~~~~~

In file included from /Users/woodbd/codes/neper/src/neper_m/nem/nem_mesh_gmsh/nem_mesh_gmsh2.c:5: /Users/woodbd/codes/neper/src/neper_m/nem/nem_mesh_gmsh/nem_meshgmsh.h:14:9: fatal error: 'omp.h' file not found

include

    ^~~~~~~

In file included from /Users/woodbd/codes/neper/src/neper_m/nem/nem_mesh_gmsh/nem_mesh_gmsh1.c:5: /Users/woodbd/codes/neper/src/neper_m/nem/nem_mesh_gmsh/nem_meshgmsh.h:14:9: fatal error: 'omp.h' file not found

include

    ^~~~~~~

In file included from /Users/woodbd/codes/neper/src/neper_m/nem/nem_mesh_gmsh/nem_mesh_gmsh3.c:5: /Users/woodbd/codes/neper/src/neper_m/nem/nem_mesh_gmsh/nem_meshgmsh.h:14:9: fatal error: 'omp.h' file not found

include

    ^~~~~~~

In file included from /Users/woodbd/codes/neper/src/neper_m/nem_meshing/nem_meshing_2d/nem_meshing_2d_face_mesh_gmsh/nem_meshing_2d_face_mesh_gmsh3.c:5: /Users/woodbd/codes/neper/src/neper_m/nem_meshing/nem_meshing_2d/nem_meshing_2d_face_mesh_gmsh/nem_meshing_2d_face_meshgmsh.h:14:9: fatal error: 'omp.h' file not found

include

    ^~~~~~~

/Users/woodbd/codes/neper/src/neper_s/nes_pproc/nes_pproc_entity/nes_pproc_entity_builtin/nes_pproc_entity_builtin2.c:8:10: fatal error: 'omp.h' file not found

include

     ^~~~~~~

/Users/woodbd/codes/neper/src/neper_s/nes_pproc/nes_pproc_entity/nes_pproc_entity_builtin/nes_pproc_entity_builtin1.c:8:10: fatal error: 'omp.h' file not found

include

     ^~~~~~~

/Users/woodbd/codes/neper/src/neper_s/nes_pproc/nes_pproc_entity/nes_pproc_entity2.c:8:10: fatal error: 'omp.h' file not found

include

     ^~~~~~~

1 error generated. 1 error generated. 1 error generated. 1 error generated. make[2]: [neper_s/CMakeFiles/neper_s.dir/nes_pproc/nes_pproc_entity/nes_pproc_entity_builtin/nes_pproc_entity_builtin2.c.o] Error 1 make[2]: Waiting for unfinished jobs.... make[2]: [neper_s/CMakeFiles/neper_s.dir/nes_pproc/nes_pproc_entity/nes_pproc_entity2.c.o] Error 1 make[2]: [neper_m/CMakeFiles/neper_m.dir/nem/nem_mesh_gmsh/nem_mesh_gmsh2.c.o] Error 1 make[2]: Waiting for unfinished jobs.... make[2]: [neper_s/CMakeFiles/neper_s.dir/nes_pproc/nes_pproc_entity/nes_pproc_entity_builtin/nes_pproc_entity_builtin1.c.o] Error 1 /Users/woodbd/codes/neper/src/neper_v/nev_show/nev_show_point/nev_show_point1.c:31:7: warning: variable 'varqty' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized] if (status) ^~ /Users/woodbd/codes/neper/src/neper_v/nev_show/nev_show_point/nev_show_point1.c:56:27: note: uninitialized use occurs here ut_free_2d_char (&vars, varqty); ^~ /Users/woodbd/codes/neper/src/neper_v/nev_show/nev_show_point/nev_show_point1.c:31:3: note: remove the 'if' if its condition is always true if (status) ^~~ /Users/woodbd/codes/neper/src/neper_v/nev_show/nev_show_point/nev_show_point1.c:10:19: note: initialize the variable 'varqty' to silence this warning int i, j, varqty, status; ^ = 0 1 error generated. 1 error generated. make[2]: [neper_m/CMakeFiles/neper_m.dir/nem_meshing/nem_meshing_2d/nem_meshing_2d_face_mesh_gmsh/nem_meshing_2d_face_mesh_gmsh1.c.o] Error 1 make[2]: [neper_m/CMakeFiles/neper_m.dir/nem_meshing/nem_meshing_2d/nem_meshing_2d_face_mesh_gmsh/nem_meshing_2d_face_mesh_gmsh2.c.o] Error 1 1 warning generated. /Users/woodbd/codes/neper/src/neper_v/nev_print/nev_print_pf/nev_print_pf2.c:263:12: warning: variable 'y' is used uninitialized whenever 'if' condition is true [-Wsometimes-uninitialized] else if (!strcmp (Print.space, "ipf")) ^~~~~~~~ /Users/woodbd/codes/neper/src/neper_v/nev_print/nev_print_pf/nev_print_pf2.c:272:81: note: uninitialized use occurs here fprintf (file, "label(\"%s\", scale(scale)*(%.3f, %.3f), NE);\n", legp, xmin, y); ^ /Users/woodbd/codes/neper/src/neper_v/nev_print/nev_print_pf/nev_print_pf2.c:263:8: note: remove the 'if' if its condition is always false else if (!strcmp (Print.space, "ipf")) ^~~~~~~~~ /Users/woodbd/codes/neper/src/neper_v/nev_print/nev_print_pf/nev_print_pf2.c:248:21: note: initial/Users/woodbd/codes/neper/src/neper_s/nes_pproc/nes_pproc_entity/nes_pproc_entity_builtin/nes_pproc_entity_builtin3.c:8:10: fatal error: 'omp.h' file not found

include

     ^~~~~~~

ize the variable 'y' to silence this warning double xmin = 0, y, xshift; ^ = 0.0 1 error generated. 1 error generated. 1 error generated. 1 error generated. make[2]: [neper_m/CMakeFiles/neper_m.dir/nem_meshing/nem_meshing_2d/nem_meshing_2d_face_mesh_gmsh/nem_meshing_2d_face_mesh_gmsh3.c.o] Error 1 make[2]: make[2]: [neper_m/CMakeFiles/neper_m.dir/nem/nem_mesh_gmsh/nem_mesh_gmsh3.c.o] Error 1 [neper_s/CMakeFiles/neper_s.dir/nes_pproc/nes_pproc_entity/nes_pproc_entity_builtin/nes_pproc_entity_builtin3.c.o] Error 1 make[2]: [neper_m/CMakeFiles/neper_m.dir/nem/nem_mesh_gmsh/nem_mesh_gmsh1.c.o] Error 1 make[1]: [neper_s/CMakeFiles/neper_s.dir/all] Error 2 make[1]: Waiting for unfinished jobs.... 1 warning generated. make[1]: [neper_m/CMakeFiles/neper_m.dir/all] Error 2 [100%] Linking CXX static library libneper_v.a [100%] Built target neper_v make: [all] Error 2