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neptune-ai / neptune-sklearn

Experiment tracking for scikit-learn. 🧩 Log, organize, visualize and compare model metrics, parameters, dataset versions, and more.
https://docs.neptune.ai/integrations/sklearn/
Apache License 2.0
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BUG: ImportError related to scikit-plot #24

Closed radlfabs closed 9 months ago

radlfabs commented 9 months ago

Hello there! 👋

Describe the bug

Using neptune-sklearn fails with an ImportError of it's dependency scikit-plot. The issue is now also reported her. Since the repo is not actively maintained, an original solution might be necessary.

Reproduction

Install neptune-sklearn freshly. Then from a REPL import neptune_sklearn.

Expected behavior

neptune_sklearn shall be imported regularly.

Traceback

Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "D:\test-scikitplot\skplot\Lib\site-packages\neptune_sklearn\__init__.py", line 54, in <module>
    from neptune_sklearn.impl import (
  File "D:\test-scikitplot\skplot\Lib\site-packages\neptune_sklearn\impl\__init__.py", line 42, in <module>
    from scikitplot.estimators import plot_learning_curve
  File "D:\test-scikitplot\skplot\Lib\site-packages\scikitplot\__init__.py", line 2, in <module>
    from . import metrics, cluster, decomposition, estimators
  File "D:\test-scikitplot\skplot\Lib\site-packages\scikitplot\metrics.py", line 27, in <module>
    from scipy import interp
ImportError: cannot import name 'interp' from 'scipy' (D:\test-scikitplot\skplot\Lib\site-packages\scipy\__init__.py)

Environment

The output of pip list:

Package         Version
--------------- ------------
contourpy       1.2.0
cycler          0.12.1
fonttools       4.47.2
joblib          1.3.2
kiwisolver      1.4.5
matplotlib      3.8.2
neptune-sklearn 2.1.1
numpy           1.26.3
packaging       23.2
pandas          2.2.0
pillow          10.2.0
pip             23.2.1
pyparsing       3.1.1
python-dateutil 2.8.2
pytz            2023.3.post1
scikit-learn    1.4.0
scikit-plot     0.3.7
scipy           1.12.0
setuptools      65.5.0
six             1.16.0
threadpoolctl   3.2.0
tzdata          2023.4
yellowbrick     1.5

The operating system you're using: Microsoft Windows 11 Home

The output of python --version: Python 3.11.7

Additional context

Since scikit-plot is not actively maintained at the moment, maybe consider finding another solution without this package.

Best wishes! radlfabs

radlfabs commented 9 months ago

Note: I get the same behaviour for import neptune.integrations.sklearn as npt_utils.

SiddhantSadangi commented 9 months ago

Hey @radlfabs ,

I am having some trouble reproducing this.

import neptune_sklearn and import neptune.integrations.sklearn as npt_utils both work for me, so does import scikitplot. I am on the same OS and using the same package versions as your environment.

Could you try creating a new environment with a fresh neptune-sklearn installation and let me know if the issue still occurs there?

radlfabs commented 9 months ago

Hey @SiddhantSadangi thank you so much for looking into this! I was able to reproduce the problem

Please see my terminal session below:

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@radlfabs ➜ /workspaces/codespaces-blank $ python -m venv test#24
@radlfabs ➜ /workspaces/codespaces-blank $ source test#24/bin/activate
(test#24) @radlfabs ➜ /workspaces/codespaces-blank $ pip install neptune neptune-sklearn
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  Downloading isoduration-20.11.0-py3-none-any.whl (11 kB)
Collecting fqdn
  Downloading fqdn-1.5.1-py3-none-any.whl (9.1 kB)
Collecting webcolors>=1.11
  Downloading webcolors-1.13-py3-none-any.whl (14 kB)
Collecting rfc3339-validator
  Downloading rfc3339_validator-0.1.4-py2.py3-none-any.whl (3.5 kB)
Collecting rfc3986-validator>0.1.0
  Downloading rfc3986_validator-0.1.1-py2.py3-none-any.whl (4.2 kB)
Collecting uri-template
  Downloading uri_template-1.3.0-py3-none-any.whl (11 kB)
Collecting jsonpointer>1.13
  Downloading jsonpointer-2.4-py2.py3-none-any.whl (7.8 kB)
Collecting arrow>=0.15.0
  Downloading arrow-1.3.0-py3-none-any.whl (66 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 66.4/66.4 kB 3.2 MB/s eta 0:00:00
Collecting types-python-dateutil>=2.8.10
  Downloading types_python_dateutil-2.8.19.20240106-py3-none-any.whl (9.7 kB)
Installing collected packages: pytz, monotonic, websocket-client, webcolors, urllib3, uri-template, tzdata, typing-extensions, types-python-dateutil, threadpoolctl, smmap, six, simplejson, rpds-py, rfc3986-validator, pyyaml, pyparsing, PyJWT, psutil, Pillow, packaging, oauthlib, numpy, msgpack, kiwisolver, jsonref, jsonpointer, joblib, jmespath, idna, future, fqdn, fonttools, cycler, click, charset-normalizer, certifi, attrs, scipy, rfc3339-validator, requests, referencing, python-dateutil, gitdb, contourpy, scikit-learn, requests-oauthlib, pandas, matplotlib, jsonschema-specifications, GitPython, botocore, arrow, yellowbrick, scikit-plot, s3transfer, jsonschema, isoduration, swagger-spec-validator, neptune-sklearn, boto3, bravado-core, bravado, neptune
  DEPRECATION: future is being installed using the legacy 'setup.py install' method, because it does not have a 'pyproject.toml' and the 'wheel' package is not installed. pip 23.1 will enforce this behaviour change. A possible replacement is to enable the '--use-pep517' option. Discussion can be found at https://github.com/pypa/pip/issues/8559
  Running setup.py install for future ... done
  DEPRECATION: bravado-core is being installed using the legacy 'setup.py install' method, because it does not have a 'pyproject.toml' and the 'wheel' package is not installed. pip 23.1 will enforce this behaviour change. A possible replacement is to enable the '--use-pep517' option. Discussion can be found at https://github.com/pypa/pip/issues/8559
  Running setup.py install for bravado-core ... done
Successfully installed GitPython-3.1.41 Pillow-10.2.0 PyJWT-2.8.0 arrow-1.3.0 attrs-23.2.0 boto3-1.34.25 botocore-1.34.25 bravado-11.0.3 bravado-core-6.1.1 certifi-2023.11.17 charset-normalizer-3.3.2 click-8.1.7 contourpy-1.2.0 cycler-0.12.1 fonttools-4.47.2 fqdn-1.5.1 future-0.18.3 gitdb-4.0.11 idna-3.6 isoduration-20.11.0 jmespath-1.0.1 joblib-1.3.2 jsonpointer-2.4 jsonref-1.1.0 jsonschema-4.21.1 jsonschema-specifications-2023.12.1 kiwisolver-1.4.5 matplotlib-3.8.2 monotonic-1.6 msgpack-1.0.7 neptune-1.8.6 neptune-sklearn-2.1.1 numpy-1.26.3 oauthlib-3.2.2 packaging-23.2 pandas-2.2.0 psutil-5.9.8 pyparsing-3.1.1 python-dateutil-2.8.2 pytz-2023.3.post1 pyyaml-6.0.1 referencing-0.32.1 requests-2.31.0 requests-oauthlib-1.3.1 rfc3339-validator-0.1.4 rfc3986-validator-0.1.1 rpds-py-0.17.1 s3transfer-0.10.0 scikit-learn-1.4.0 scikit-plot-0.3.7 scipy-1.12.0 simplejson-3.19.2 six-1.16.0 smmap-5.0.1 swagger-spec-validator-3.0.3 threadpoolctl-3.2.0 types-python-dateutil-2.8.19.20240106 typing-extensions-4.9.0 tzdata-2023.4 uri-template-1.3.0 urllib3-2.0.7 webcolors-1.13 websocket-client-1.7.0 yellowbrick-1.5

[notice] A new release of pip is available: 23.0.1 -> 23.3.2
[notice] To update, run: pip install --upgrade pip
(test#24) @radlfabs ➜ /workspaces/codespaces-blank $ python
Python 3.10.13 (main, Jan 10 2024, 19:45:45) [GCC 9.4.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import neptune_sklearn
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/workspaces/codespaces-blank/test#24/lib/python3.10/site-packages/neptune_sklearn/__init__.py", line 54, in <module>
    from neptune_sklearn.impl import (
  File "/workspaces/codespaces-blank/test#24/lib/python3.10/site-packages/neptune_sklearn/impl/__init__.py", line 42, in <module>
    from scikitplot.estimators import plot_learning_curve
  File "/workspaces/codespaces-blank/test#24/lib/python3.10/site-packages/scikitplot/__init__.py", line 2, in <module>
    from . import metrics, cluster, decomposition, estimators
  File "/workspaces/codespaces-blank/test#24/lib/python3.10/site-packages/scikitplot/metrics.py", line 27, in <module>
    from scipy import interp
ImportError: cannot import name 'interp' from 'scipy' (/workspaces/codespaces-blank/test#24/lib/python3.10/site-packages/scipy/__init__.py)
>>> import scikitplot
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/workspaces/codespaces-blank/test#24/lib/python3.10/site-packages/scikitplot/__init__.py", line 2, in <module>
    from . import metrics, cluster, decomposition, estimators
  File "/workspaces/codespaces-blank/test#24/lib/python3.10/site-packages/scikitplot/metrics.py", line 27, in <module>
    from scipy import interp
ImportError: cannot import name 'interp' from 'scipy' (/workspaces/codespaces-blank/test#24/lib/python3.10/site-packages/scipy/__init__.py)
>>> import neptune.integrations.sklearn as npt_utils
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/workspaces/codespaces-blank/test#24/lib/python3.10/site-packages/neptune/integrations/sklearn/__init__.py", line 18, in <module>
    from neptune_sklearn.impl import *  # noqa: F401,F403
  File "/workspaces/codespaces-blank/test#24/lib/python3.10/site-packages/neptune_sklearn/__init__.py", line 54, in <module>
    from neptune_sklearn.impl import (
  File "/workspaces/codespaces-blank/test#24/lib/python3.10/site-packages/neptune_sklearn/impl/__init__.py", line 42, in <module>
    from scikitplot.estimators import plot_learning_curve
  File "/workspaces/codespaces-blank/test#24/lib/python3.10/site-packages/scikitplot/__init__.py", line 2, in <module>
    from . import metrics, cluster, decomposition, estimators
  File "/workspaces/codespaces-blank/test#24/lib/python3.10/site-packages/scikitplot/metrics.py", line 27, in <module>
    from scipy import interp
ImportError: cannot import name 'interp' from 'scipy' (/workspaces/codespaces-blank/test#24/lib/python3.10/site-packages/scipy/__init__.py)
>>> quit()
(test#24) @radlfabs ➜ /workspaces/codespaces-blank $ pip list
Package                   Version
------------------------- ---------------
arrow                     1.3.0
attrs                     23.2.0
boto3                     1.34.25
botocore                  1.34.25
bravado                   11.0.3
bravado-core              6.1.1
certifi                   2023.11.17
charset-normalizer        3.3.2
click                     8.1.7
contourpy                 1.2.0
cycler                    0.12.1
fonttools                 4.47.2
fqdn                      1.5.1
future                    0.18.3
gitdb                     4.0.11
GitPython                 3.1.41
idna                      3.6
isoduration               20.11.0
jmespath                  1.0.1
joblib                    1.3.2
jsonpointer               2.4
jsonref                   1.1.0
jsonschema                4.21.1
jsonschema-specifications 2023.12.1
kiwisolver                1.4.5
matplotlib                3.8.2
monotonic                 1.6
msgpack                   1.0.7
neptune                   1.8.6
neptune-sklearn           2.1.1
numpy                     1.26.3
oauthlib                  3.2.2
packaging                 23.2
pandas                    2.2.0
pillow                    10.2.0
pip                       23.0.1
psutil                    5.9.8
PyJWT                     2.8.0
pyparsing                 3.1.1
python-dateutil           2.8.2
pytz                      2023.3.post1
PyYAML                    6.0.1
referencing               0.32.1
requests                  2.31.0
requests-oauthlib         1.3.1
rfc3339-validator         0.1.4
rfc3986-validator         0.1.1
rpds-py                   0.17.1
s3transfer                0.10.0
scikit-learn              1.4.0
scikit-plot               0.3.7
scipy                     1.12.0
setuptools                65.5.0
simplejson                3.19.2
six                       1.16.0
smmap                     5.0.1
swagger-spec-validator    3.0.3
threadpoolctl             3.2.0
types-python-dateutil     2.8.19.20240106
typing_extensions         4.9.0
tzdata                    2023.4
uri-template              1.3.0
urllib3                   2.0.7
webcolors                 1.13
websocket-client          1.7.0
yellowbrick               1.5

[notice] A new release of pip is available: 23.0.1 -> 23.3.2
[notice] To update, run: pip install --upgrade pip
(test#24) @radlfabs ➜ /workspaces/codespaces-blank $
radlfabs commented 9 months ago

@SiddhantSadangi There seems to be a constellation, where scipy==1.12 is being installed, which causes the scikit-plot legacy code to fail. I can run import neptune_sklearn after pip install --upgrade scipy==1.11.4:

@radlfabs ➜ /workspaces/codespaces-blank $ pip install neptune
Collecting neptune
  Downloading neptune-1.8.6-py3-none-any.whl.metadata (17 kB)
Requirement already satisfied: GitPython>=2.0.8 in /home/codespace/.local/lib/python3.10/site-packages (from neptune) (3.1.41)
Requirement already satisfied: Pillow>=1.1.6 in /home/codespace/.local/lib/python3.10/site-packages (from neptune) (10.2.0)
Collecting PyJWT (from neptune)
  Downloading PyJWT-2.8.0-py3-none-any.whl.metadata (4.2 kB)
Collecting boto3>=1.28.0 (from neptune)
  Downloading boto3-1.34.25-py3-none-any.whl.metadata (6.6 kB)
Collecting bravado<12.0.0,>=11.0.0 (from neptune)
  Downloading bravado-11.0.3-py2.py3-none-any.whl (38 kB)
Collecting click>=7.0 (from neptune)
  Downloading click-8.1.7-py3-none-any.whl.metadata (3.0 kB)
Collecting future>=0.17.1 (from neptune)
  Downloading future-0.18.3.tar.gz (840 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 840.9/840.9 kB 16.9 MB/s eta 0:00:00
  Installing build dependencies ... done
  Getting requirements to build wheel ... done
  Preparing metadata (pyproject.toml) ... done
Collecting oauthlib>=2.1.0 (from neptune)
  Downloading oauthlib-3.2.2-py3-none-any.whl (151 kB)
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Requirement already satisfied: packaging in /home/codespace/.local/lib/python3.10/site-packages (from neptune) (23.2)
Requirement already satisfied: pandas in /home/codespace/.local/lib/python3.10/site-packages (from neptune) (2.1.4)
Requirement already satisfied: psutil in /home/codespace/.local/lib/python3.10/site-packages (from neptune) (5.9.7)
Requirement already satisfied: requests>=2.20.0 in /home/codespace/.local/lib/python3.10/site-packages (from neptune) (2.31.0)
Collecting requests-oauthlib>=1.0.0 (from neptune)
  Downloading requests_oauthlib-1.3.1-py2.py3-none-any.whl (23 kB)
Requirement already satisfied: six>=1.12.0 in /home/codespace/.local/lib/python3.10/site-packages (from neptune) (1.16.0)
Collecting swagger-spec-validator>=2.7.4 (from neptune)
  Downloading swagger_spec_validator-3.0.3-py2.py3-none-any.whl (27 kB)
Requirement already satisfied: urllib3 in /usr/local/python/3.10.13/lib/python3.10/site-packages (from neptune) (2.0.7)
Requirement already satisfied: websocket-client!=1.0.0,>=0.35.0 in /home/codespace/.local/lib/python3.10/site-packages (from neptune) (1.7.0)
Collecting botocore<1.35.0,>=1.34.25 (from boto3>=1.28.0->neptune)
  Downloading botocore-1.34.25-py3-none-any.whl.metadata (5.7 kB)
Collecting jmespath<2.0.0,>=0.7.1 (from boto3>=1.28.0->neptune)
  Downloading jmespath-1.0.1-py3-none-any.whl (20 kB)
Collecting s3transfer<0.11.0,>=0.10.0 (from boto3>=1.28.0->neptune)
  Downloading s3transfer-0.10.0-py3-none-any.whl.metadata (1.7 kB)
Collecting bravado-core>=5.16.1 (from bravado<12.0.0,>=11.0.0->neptune)
  Downloading bravado-core-6.1.1.tar.gz (63 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 63.9/63.9 kB 1.9 MB/s eta 0:00:00
  Installing build dependencies ... done
  Getting requirements to build wheel ... done
  Preparing metadata (pyproject.toml) ... done
Collecting msgpack (from bravado<12.0.0,>=11.0.0->neptune)
  Downloading msgpack-1.0.7-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.1 kB)
Requirement already satisfied: python-dateutil in /home/codespace/.local/lib/python3.10/site-packages (from bravado<12.0.0,>=11.0.0->neptune) (2.8.2)
Requirement already satisfied: pyyaml in /home/codespace/.local/lib/python3.10/site-packages (from bravado<12.0.0,>=11.0.0->neptune) (6.0.1)
Collecting simplejson (from bravado<12.0.0,>=11.0.0->neptune)
  Downloading simplejson-3.19.2-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.1 kB)
Collecting monotonic (from bravado<12.0.0,>=11.0.0->neptune)
  Downloading monotonic-1.6-py2.py3-none-any.whl (8.2 kB)
Requirement already satisfied: typing-extensions in /home/codespace/.local/lib/python3.10/site-packages (from bravado<12.0.0,>=11.0.0->neptune) (4.9.0)
Requirement already satisfied: gitdb<5,>=4.0.1 in /home/codespace/.local/lib/python3.10/site-packages (from GitPython>=2.0.8->neptune) (4.0.11)
Requirement already satisfied: charset-normalizer<4,>=2 in /home/codespace/.local/lib/python3.10/site-packages (from requests>=2.20.0->neptune) (3.3.2)
Requirement already satisfied: idna<4,>=2.5 in /home/codespace/.local/lib/python3.10/site-packages (from requests>=2.20.0->neptune) (3.6)
Requirement already satisfied: certifi>=2017.4.17 in /home/codespace/.local/lib/python3.10/site-packages (from requests>=2.20.0->neptune) (2023.11.17)
Requirement already satisfied: jsonschema in /home/codespace/.local/lib/python3.10/site-packages (from swagger-spec-validator>=2.7.4->neptune) (4.20.0)
Requirement already satisfied: numpy<2,>=1.22.4 in /home/codespace/.local/lib/python3.10/site-packages (from pandas->neptune) (1.26.3)
Requirement already satisfied: pytz>=2020.1 in /home/codespace/.local/lib/python3.10/site-packages (from pandas->neptune) (2023.3.post1)
Requirement already satisfied: tzdata>=2022.1 in /home/codespace/.local/lib/python3.10/site-packages (from pandas->neptune) (2023.4)
Collecting jsonref (from bravado-core>=5.16.1->bravado<12.0.0,>=11.0.0->neptune)
  Downloading jsonref-1.1.0-py3-none-any.whl (9.4 kB)
Requirement already satisfied: smmap<6,>=3.0.1 in /home/codespace/.local/lib/python3.10/site-packages (from gitdb<5,>=4.0.1->GitPython>=2.0.8->neptune) (5.0.1)
Requirement already satisfied: attrs>=22.2.0 in /home/codespace/.local/lib/python3.10/site-packages (from jsonschema->swagger-spec-validator>=2.7.4->neptune) (23.2.0)
Requirement already satisfied: jsonschema-specifications>=2023.03.6 in /home/codespace/.local/lib/python3.10/site-packages (from jsonschema->swagger-spec-validator>=2.7.4->neptune) (2023.12.1)
Requirement already satisfied: referencing>=0.28.4 in /home/codespace/.local/lib/python3.10/site-packages (from jsonschema->swagger-spec-validator>=2.7.4->neptune) (0.32.1)
Requirement already satisfied: rpds-py>=0.7.1 in /home/codespace/.local/lib/python3.10/site-packages (from jsonschema->swagger-spec-validator>=2.7.4->neptune) (0.16.2)
Requirement already satisfied: fqdn in /home/codespace/.local/lib/python3.10/site-packages (from jsonschema[format-nongpl]>=2.5.1->bravado-core>=5.16.1->bravado<12.0.0,>=11.0.0->neptune) (1.5.1)
Requirement already satisfied: isoduration in /home/codespace/.local/lib/python3.10/site-packages (from jsonschema[format-nongpl]>=2.5.1->bravado-core>=5.16.1->bravado<12.0.0,>=11.0.0->neptune) (20.11.0)
Requirement already satisfied: jsonpointer>1.13 in /home/codespace/.local/lib/python3.10/site-packages (from jsonschema[format-nongpl]>=2.5.1->bravado-core>=5.16.1->bravado<12.0.0,>=11.0.0->neptune) (2.4)
Requirement already satisfied: rfc3339-validator in /home/codespace/.local/lib/python3.10/site-packages (from jsonschema[format-nongpl]>=2.5.1->bravado-core>=5.16.1->bravado<12.0.0,>=11.0.0->neptune) (0.1.4)
Requirement already satisfied: rfc3986-validator>0.1.0 in /home/codespace/.local/lib/python3.10/site-packages (from jsonschema[format-nongpl]>=2.5.1->bravado-core>=5.16.1->bravado<12.0.0,>=11.0.0->neptune) (0.1.1)
Requirement already satisfied: uri-template in /home/codespace/.local/lib/python3.10/site-packages (from jsonschema[format-nongpl]>=2.5.1->bravado-core>=5.16.1->bravado<12.0.0,>=11.0.0->neptune) (1.3.0)
Requirement already satisfied: webcolors>=1.11 in /home/codespace/.local/lib/python3.10/site-packages (from jsonschema[format-nongpl]>=2.5.1->bravado-core>=5.16.1->bravado<12.0.0,>=11.0.0->neptune) (1.13)
Requirement already satisfied: arrow>=0.15.0 in /home/codespace/.local/lib/python3.10/site-packages (from isoduration->jsonschema[format-nongpl]>=2.5.1->bravado-core>=5.16.1->bravado<12.0.0,>=11.0.0->neptune) (1.3.0)
Requirement already satisfied: types-python-dateutil>=2.8.10 in /home/codespace/.local/lib/python3.10/site-packages (from arrow>=0.15.0->isoduration->jsonschema[format-nongpl]>=2.5.1->bravado-core>=5.16.1->bravado<12.0.0,>=11.0.0->neptune) (2.8.19.20240106)
Downloading neptune-1.8.6-py3-none-any.whl (481 kB)
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Downloading boto3-1.34.25-py3-none-any.whl (139 kB)
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Downloading click-8.1.7-py3-none-any.whl (97 kB)
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Downloading PyJWT-2.8.0-py3-none-any.whl (22 kB)
Downloading botocore-1.34.25-py3-none-any.whl (11.9 MB)
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Downloading msgpack-1.0.7-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (530 kB)
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Downloading s3transfer-0.10.0-py3-none-any.whl (82 kB)
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Downloading simplejson-3.19.2-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (137 kB)
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Building wheels for collected packages: future, bravado-core
  Building wheel for future (pyproject.toml) ... done
  Created wheel for future: filename=future-0.18.3-py3-none-any.whl size=492024 sha256=4d9b3a5378ca8cdd8f484d1235670086434118b695f7ccbdcd0a6038f2e9d19d
  Stored in directory: /home/codespace/.cache/pip/wheels/5e/a9/47/f118e66afd12240e4662752cc22cefae5d97275623aa8ef57d
  Building wheel for bravado-core (pyproject.toml) ... done
  Created wheel for bravado-core: filename=bravado_core-6.1.1-py2.py3-none-any.whl size=67673 sha256=4f511c32b2333c80cd23db83cbad67fde0aef9714bf2d65753b182d295c795a2
  Stored in directory: /home/codespace/.cache/pip/wheels/42/35/4a/44ec4c358db21a5d63ed4e40f0f0012a438106f220bce4ccba
Successfully built future bravado-core
Installing collected packages: monotonic, simplejson, PyJWT, oauthlib, msgpack, jsonref, jmespath, future, click, requests-oauthlib, botocore, s3transfer, swagger-spec-validator, boto3, bravado-core, bravado, neptune
Successfully installed PyJWT-2.8.0 boto3-1.34.25 botocore-1.34.25 bravado-11.0.3 bravado-core-6.1.1 click-8.1.7 future-0.18.3 jmespath-1.0.1 jsonref-1.1.0 monotonic-1.6 msgpack-1.0.7 neptune-1.8.6 oauthlib-3.2.2 requests-oauthlib-1.3.1 s3transfer-0.10.0 simplejson-3.19.2 swagger-spec-validator-3.0.3
@radlfabs ➜ /workspaces/codespaces-blank $ pip install neptune-sklearn
Collecting neptune-sklearn
  Downloading neptune_sklearn-2.1.1-py3-none-any.whl.metadata (4.7 kB)
Requirement already satisfied: scikit-learn>=0.24.1 in /home/codespace/.local/lib/python3.10/site-packages (from neptune-sklearn) (1.3.2)
Collecting scikit-plot>=0.3.7 (from neptune-sklearn)
  Downloading scikit_plot-0.3.7-py3-none-any.whl (33 kB)
Collecting yellowbrick>=1.3 (from neptune-sklearn)
  Downloading yellowbrick-1.5-py3-none-any.whl (282 kB)
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Requirement already satisfied: numpy<2.0,>=1.17.3 in /home/codespace/.local/lib/python3.10/site-packages (from scikit-learn>=0.24.1->neptune-sklearn) (1.26.3)
Requirement already satisfied: scipy>=1.5.0 in /home/codespace/.local/lib/python3.10/site-packages (from scikit-learn>=0.24.1->neptune-sklearn) (1.11.4)
Requirement already satisfied: joblib>=1.1.1 in /home/codespace/.local/lib/python3.10/site-packages (from scikit-learn>=0.24.1->neptune-sklearn) (1.3.2)
Requirement already satisfied: threadpoolctl>=2.0.0 in /home/codespace/.local/lib/python3.10/site-packages (from scikit-learn>=0.24.1->neptune-sklearn) (3.2.0)
Requirement already satisfied: matplotlib>=1.4.0 in /home/codespace/.local/lib/python3.10/site-packages (from scikit-plot>=0.3.7->neptune-sklearn) (3.8.2)
Requirement already satisfied: cycler>=0.10.0 in /home/codespace/.local/lib/python3.10/site-packages (from yellowbrick>=1.3->neptune-sklearn) (0.12.1)
Requirement already satisfied: contourpy>=1.0.1 in /home/codespace/.local/lib/python3.10/site-packages (from matplotlib>=1.4.0->scikit-plot>=0.3.7->neptune-sklearn) (1.2.0)
Requirement already satisfied: fonttools>=4.22.0 in /home/codespace/.local/lib/python3.10/site-packages (from matplotlib>=1.4.0->scikit-plot>=0.3.7->neptune-sklearn) (4.47.0)
Requirement already satisfied: kiwisolver>=1.3.1 in /home/codespace/.local/lib/python3.10/site-packages (from matplotlib>=1.4.0->scikit-plot>=0.3.7->neptune-sklearn) (1.4.5)
Requirement already satisfied: packaging>=20.0 in /home/codespace/.local/lib/python3.10/site-packages (from matplotlib>=1.4.0->scikit-plot>=0.3.7->neptune-sklearn) (23.2)
Requirement already satisfied: pillow>=8 in /home/codespace/.local/lib/python3.10/site-packages (from matplotlib>=1.4.0->scikit-plot>=0.3.7->neptune-sklearn) (10.2.0)
Requirement already satisfied: pyparsing>=2.3.1 in /home/codespace/.local/lib/python3.10/site-packages (from matplotlib>=1.4.0->scikit-plot>=0.3.7->neptune-sklearn) (3.1.1)
Requirement already satisfied: python-dateutil>=2.7 in /home/codespace/.local/lib/python3.10/site-packages (from matplotlib>=1.4.0->scikit-plot>=0.3.7->neptune-sklearn) (2.8.2)
Requirement already satisfied: six>=1.5 in /home/codespace/.local/lib/python3.10/site-packages (from python-dateutil>=2.7->matplotlib>=1.4.0->scikit-plot>=0.3.7->neptune-sklearn) (1.16.0)
Downloading neptune_sklearn-2.1.1-py3-none-any.whl (14 kB)
Installing collected packages: yellowbrick, scikit-plot, neptune-sklearn
Successfully installed neptune-sklearn-2.1.1 scikit-plot-0.3.7 yellowbrick-1.5
@radlfabs ➜ /workspaces/codespaces-blank $ pip install --upgrade scipy=1.11.4
ERROR: Invalid requirement: 'scipy=1.11.4'
Hint: = is not a valid operator. Did you mean == ?
@radlfabs ➜ /workspaces/codespaces-blank $ pip install --upgrade scipy==1.11.4
Requirement already satisfied: scipy==1.11.4 in /home/codespace/.local/lib/python3.10/site-packages (1.11.4)
Requirement already satisfied: numpy<1.28.0,>=1.21.6 in /home/codespace/.local/lib/python3.10/site-packages (from scipy==1.11.4) (1.26.3)

# testing old scipy
@radlfabs ➜ /workspaces/codespaces-blank $ python
Python 3.10.13 (main, Jan 10 2024, 19:45:45) [GCC 9.4.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import neptune_sklearn
>>> quit()

# works yayy

# testing scipy==1.12.0
@radlfabs ➜ /workspaces/codespaces-blank $ pip install --upgrade scipy==1.12
Collecting scipy==1.12
  Downloading scipy-1.12.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB)
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Requirement already satisfied: numpy<1.29.0,>=1.22.4 in /home/codespace/.local/lib/python3.10/site-packages (from scipy==1.12) (1.26.3)
Downloading scipy-1.12.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (38.4 MB)
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Installing collected packages: scipy
  Attempting uninstall: scipy
    Found existing installation: scipy 1.11.4
    Uninstalling scipy-1.11.4:
      Successfully uninstalled scipy-1.11.4
Successfully installed scipy-1.12.0
@radlfabs ➜ /workspaces/codespaces-blank $ python
Python 3.10.13 (main, Jan 10 2024, 19:45:45) [GCC 9.4.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import neptune_sklearn
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/usr/local/python/3.10.13/lib/python3.10/site-packages/neptune_sklearn/__init__.py", line 54, in <module>
    from neptune_sklearn.impl import (
  File "/usr/local/python/3.10.13/lib/python3.10/site-packages/neptune_sklearn/impl/__init__.py", line 42, in <module>
    from scikitplot.estimators import plot_learning_curve
  File "/usr/local/python/3.10.13/lib/python3.10/site-packages/scikitplot/__init__.py", line 2, in <module>
    from . import metrics, cluster, decomposition, estimators
  File "/usr/local/python/3.10.13/lib/python3.10/site-packages/scikitplot/metrics.py", line 27, in <module>
    from scipy import interp
ImportError: cannot import name 'interp' from 'scipy' (/usr/local/python/3.10.13/lib/python3.10/site-packages/scipy/__init__.py)
>>>
radlfabs commented 9 months ago

At the moment, I'm not sure, why from scipy import interp was possible in 2018 😆 Digging in the scipy branches, there did not seem to be a scipy.interpolate.interp function in the first place. Maybe numpy.interp somehow got into the scipy namespace. Anyhow, I was not yet able to blame a scipy-commit that deprecated this for scipy 1.12.

SiddhantSadangi commented 9 months ago

Thanks a lot for the note on scipy==1.12. This really helps! 🙇 Since this is mostly an external issue, I will pin scipy to <1.12 in neptune-sklearn's base requirements. We can revisit the constraints and exclude the offending versions once a fix is released.

SiddhantSadangi commented 9 months ago

Hey @radlfabs We just released v2.1.2 that constrains scipy to <1.12.

Please let me know if this works for you

radlfabs commented 9 months ago

Hey @SiddhantSadangi Everything works perfectly as expected now! Thanks 😊