Closed adomingues closed 4 years ago
Hi there,
Apologies for the delayed reply - occasionally the notifications don't show up in my inbox when an issue is posted. The main difference between version 1 and 2 is a change of aligners used (from Bowtie1 to Bowtie2), but aside from that they behave in the same manner (meaning the alignments to pseudo-genomes are unfortunately not currently preserved).
Best, Nick
Hi @nskvir this basically to reboot an issue from V1 because it might have been solved now in `repEnrich2 but I could not find which are the major differences with the previous version.
Basically what I want to know is if this new version keeps the alignments to repeat consensus (which v1 didn't), or if
repConsensus
is still the way to go?Just as a background, I am working on a project where we want to know if
For 2 I definitely need the alignments, therefore the question.
Cheers.