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nerettilab / RepEnrich2

RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
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Differential expression analysis #29

Open matwgmkw opened 1 year ago

matwgmkw commented 1 year ago

Hi Nick,

I am finally at the differential enrichment analysis step! You mentioned that both EdgeR or DESEQ would work for the analysis. In the EdgeR analysis you set the library size manually, but do you know how to do it in DESEQ2? If possible, could you please share some sample code for the analysis?

Thank you. Matthew