interactive node

[MattBixley]

App won't launch on interactive node, will launch on hugemem and compute

`Script starting... Waiting for RStudio Server to open port 20128...

Currently Loaded Modules: 1) RStudio-Server/2023.12.0-369 17) bzip2/1.0.8-GCCcore-12.3.0 2) GCCcore/12.3.0 18) XZ/5.4.2-GCCcore-12.3.0 3) zlib/1.2.13-GCCcore-12.3.0 19) PCRE2/10.42-GCCcore-12.3.0 4) binutils/2.40-GCCcore-12.3.0 20) ncurses/6.4-GCCcore-12.3.0 5) GCC/12.3.0 21) libreadline/8.2-GCCcore-12.3.0 6) numactl/2.0.16-GCCcore-12.3.0 22) libpng/1.6.40-GCCcore-12.3.0 7) UCX/1.14.1-GCCcore-12.3.0 23) libxml2/2.11.4-GCCcore-12.3.0 8) UCC/1.2.0-GCCcore-12.3.0 24) SQLite/3.42.0-GCCcore-12.3.0 9) OpenMPI/4.1.5-GCC-12.3.0 25) OpenSSL/1.1 10) OpenBLAS/0.3.23-GCC-12.3.0 26) cURL/8.3.0-GCCcore-12.3.0 11) FlexiBLAS/3.3.1-GCC-12.3.0 27) NLopt/2.7.1-GCC-12.3.0 12) FFTW/3.3.10-GCC-12.3.0 28) GMP/6.2.1-GCCcore-12.3.0 13) gompi/2023a 29) Java/20.0.2 14) FFTW.MPI/3.3.10-gompi-2023a 30) nodejs/18.18.2-GCCcore-12.3.0 15) ScaLAPACK/2.2.0-gompi-2023a-fb 31) libgit2/1.6.4-GCC-12.3.0 16) foss/2023a 32) R/4.3.3-foss-2023a

Starting up rserver... ++ whoami

• rserver --www-port 20128 --auth-none 0 --auth-pam-helper-path /home/agresearch.co.nz/bixleym/ondemand/data/sys/dashboard/batch_connect/dev/rstudio/output/9e6a9b1c-bb94-4dca-a1e6-660a80448171/bin/auth --auth-encrypt-password 0 --rsession-path /home/agresearch.co.nz/bixleym/ondemand/data/sys/dashboard/batch_connect/dev/rstudio/output/9e6a9b1c-bb94-4dca-a1e6-660a80448171/rsession.sh --server-data-dir /tmp --database-config-file /home/agresearch.co.nz/bixleym/ondemand/data/sys/dashboard/batch_connect/dev/rstudio/output/9e6a9b1c-bb94-4dca-a1e6-660a80448171/database.conf --server-user bixleym@agresearch.co.nz Timed out waiting for RStudio Server to open port 20128! Cleaning up...`

[MattBixley]

Likely fault of slurm handle bug. will test chaning timeout in the template/after.sh.erb file to 600s

Did not work on compute

[MattBixley]

resolved

[MattBixley]

resolved