Parallelize VCF to FASTA operation using multiprocessing module

ness-lab / mrt

0 stars 2 forks source link

Parallelize VCF to FASTA operation using multiprocessing module #22

Open aays opened 4 years ago

aays commented 4 years ago

VCF -> FASTA is currently implemented in slim_sims.py, but iterates through the VCFs one at a time.

Using mp could involve pulling in the full list of VCFs and then breaking them into chunks (potentially with itertools) and then splitting those chunks across cores.