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ness-lab
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readcomb
Fast detection of recombinant sequences from BAM files
GNU General Public License v3.0
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Mock data and human readable TODOs
#5
Closed
jiyvliu
closed
4 years ago
jiyvliu
commented
4 years ago
TODO
[x] Arguement parsing and polishing for human version of readcomb
[x] Modify logging statistics for bam filtering readcomb
[ ] More testing between bam filtering and human readable readcomb
[x] Change function names for human readable version for organization
[x] Change sequences to mock_sequence functions
[x] Use setattr() for the mock_create
jiyvliu
commented
4 years ago
For arguements, changed -f, --filename to -b, --bam to be more explicit in the naming of parameters
Changed fieldnames for the logging to match with the updated counter printing
jiyvliu
commented
4 years ago
All function unique to phase_change
readable.py begin with human
...
Importing functions from phase_change_filter.py into phase_change_readable.py
TODO