nestauk rhodonite issues

nestauk / rhodonite

A Python package for the creation and study of coocurrence networks.

MIT License

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issues

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Improve cumulative_cooccurrence_graph API

#59 georgerichardson opened 4 years ago
0
Graph classes + ABC

#58 georgerichardson opened 5 years ago
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Implement data structure for sequences

#57 georgerichardson opened 5 years ago
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37 docs

#56 georgerichardson closed 5 years ago
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37 docs

#55 georgerichardson closed 5 years ago
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Change docstrings to numpy

#54 georgerichardson opened 5 years ago
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Dev

#53 georgerichardson closed 5 years ago
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31 k factor

#52 georgerichardson closed 5 years ago
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Split cumulative cooccurrence network

#51 georgerichardson opened 5 years ago
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Implement fast approximate link search

#50 georgerichardson opened 5 years ago
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Fix NoneType bug in find_links

#49 georgerichardson closed 5 years ago
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Initial Commit- added build_cooccurrence_graph.py

#48 dede95 opened 5 years ago
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Use 2d array setting functions

#47 georgerichardson opened 5 years ago
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32 phylomemetic commandline

#46 georgerichardson closed 5 years ago
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Cumulative cooccurrence graph functionality

#45 georgerichardson opened 5 years ago
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Refactor code to eliminate graph classes

#44 georgerichardson closed 5 years ago
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Add example datasets

#43 georgerichardson opened 5 years ago
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Look in to adding continuous integration

#42 georgerichardson opened 5 years ago
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Faster spectral

#41 georgerichardson closed 5 years ago
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Phylomemies built on containment

#40 georgerichardson opened 5 years ago
1
Add vector and string support for tabular functions

#39 georgerichardson opened 5 years ago
1
Phylomemetic from_communities memory

#38 georgerichardson opened 5 years ago
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Write docs

#37 georgerichardson opened 5 years ago
1
Cooccurrence performance

#36 georgerichardson closed 5 years ago
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Add group merge method

#35 georgerichardson opened 5 years ago
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Faster link searching

#34 georgerichardson closed 5 years ago
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Commandline app - Cooccurrence

#33 georgerichardson opened 5 years ago
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Commandline app - phylomemetic

#32 georgerichardson closed 5 years ago
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Incorporate K factor into package

#31 georgerichardson closed 5 years ago
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Put Rhodonite on PyPi

#30 georgerichardson opened 5 years ago
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Use locality sensitive hashing to find parental candidates

#29 georgerichardson closed 5 years ago
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9 term properties

#28 georgerichardson closed 5 years ago
1
fix issues arising from reversing phylomemetic direction

#27 georgerichardson closed 5 years ago
1
23 cluster neighbours

#26 georgerichardson closed 5 years ago
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phylomemetic add cross-pollination and divergence functions

#25 georgerichardson closed 5 years ago
1
plotting for phylomemetic graph

#24 georgerichardson opened 6 years ago
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Improve parent finding algorithm with clustering

#23 georgerichardson closed 5 years ago
2
add logging for cooccurrence and phylomemetic graphs

#22 georgerichardson opened 6 years ago
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cooccurrence graph unit tests

#21 georgerichardson closed 5 years ago
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phylomemetic graph unit tests

#20 georgerichardson opened 6 years ago
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Phylomemetic graph errors

#19 georgerichardson closed 6 years ago
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Phylomemetic graph

#18 georgerichardson closed 6 years ago
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Finish from_matrix method in CooccurrenceGraph

#17 georgerichardson opened 6 years ago
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14 api

#16 georgerichardson closed 6 years ago
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Other distance metrics for phylomemy

#15 georgerichardson opened 6 years ago
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Re-design API

#14 georgerichardson closed 6 years ago
1
8 vertex features

#13 georgerichardson closed 6 years ago
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7 clique density

#12 georgerichardson closed 6 years ago
1
10 direct parents

#11 georgerichardson closed 6 years ago
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Find direct phylomemtic parents

#10 georgerichardson closed 6 years ago
0