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netZoo / netZooPy

netZooPy is a network biology package implemented in Python.
https://netzoo.github.io/
GNU General Public License v3.0
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changed tmp file write location #352

Closed newmanno closed 2 weeks ago

newmanno commented 3 months ago

Previously the code created a ./tmp folder, but then wrote the files into the /tmp folder instead. This creates an issue when multiple users share the same environment like on a server. One user can write to /tmp, but then another user who is also running PANDA/LIONESS does not have permission to overwrite their file

marouenbg commented 3 months ago

Good catch @newmanno ! Can you please change the target brach to devel, @violafanfani will be have a look at this shortly.

marouenbg commented 3 weeks ago

@violafanfani Have a look here!

violafanfani commented 2 weeks ago

We could actually give the user the choice of where the folder is, but this works for now. I am trying to have the CI actions start

violafanfani commented 2 weeks ago

I can't start CI here. @newmanno please try adding an empty commit to trigger the actions. I have also added a new PR that allows to explicitly set the folder.

And sorry for not seeing this for a while

marouenbg commented 2 weeks ago

@violafanfani closing and re-opening the PR does the effect you're looking for!