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netZoo / netZooR

netZooR is a network biology package implemented in R.
https://netzoo.github.io/
GNU General Public License v3.0
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TIGER in netZooR #322

Closed Gaoyuan-Li closed 1 month ago

Gaoyuan-Li commented 2 months ago

Hello,

I am trying to use the TIGER function in the netZooR package, but I encountered a few issues:

  1. The tiger() function is not available in the Bioconductor release version 1.8.0. Also, it is not in the Reference Manual

  2. The documentation for the tiger() function is blank. https://netzoo.github.io/netZooR/reference/tiger.html

I am currently using the netZooR package version 1.8.0 from Bioconductor. Could you please advise on how and where I can use the tiger() function? Is there an alternative method or a different version of the package where this function is available and documented?

Thank you for your assistance.

Best, Gaoyuan

marouenbg commented 2 months ago

Hi @Gaoyuan-Li cc @cchen22

  1. You can install the newest netZooR version by typing remotes::install_github("netZoo/netZooR@devel") It takes a while for Bioconductor to get the latest updates
  2. I am working on the docs for TIGER but you can access them here: https://github.com/netZoo/netZooR/blob/master/R/TIGER.R#L22

Thank you, Marouen

marouenbg commented 1 month ago

Fixing TIGER docs https://github.com/netZoo/netZooR/pull/323

marouenbg commented 1 month ago

Tiger documentation is now fixed: https://netzoo.github.io/netZooR/reference/tiger.html