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netZoo / netbooks

Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..
https://netbooks.networkmedicine.org
GNU General Public License v3.0
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Error received for chunk 28 code in panda_gtex_tutorial_server.ipynb #31

Closed wilsonavac closed 5 months ago

wilsonavac commented 5 months ago

lcl_outdegree <- calcDegree(pandaLCL, type="tf") wb_outdegree <- calcDegree(pandaWB, type="tf")

Error in calcDegree(pandaLCL, type = "tf"): Cannot run calcDegree on object of class 'pandaObj'. Must be of class 'panda' or 'matrix'. Traceback:

  1. calcDegree(pandaLCL, type = "tf")
  2. stop(paste(sep = "", "Cannot run calcDegree on object of class '", . class(x), "'. Must be of class 'panda' or 'matrix'."))
marouenbg commented 5 months ago

Being fixed in https://github.com/jnpaulson/pandaR/pull/8

marouenbg commented 5 months ago

This was fixed now, try again @wilsonavac