corr = stats.compare_images(nsynth, genepc) # expected str, bytes or os.PathLike object, not GiftiImage

[psyzxy]

Description of issue

Hi, I am a new learner in neuromaps.When I conduct the codes in the examples(https://netneurolab.github.io/neuromaps/auto_examples/index.html), everything goes well until the line corr = stats.compare_images(nsynth, genepc) . I got a error, but I don't know where goes wrong. Here is the code.(same as the code in the examples)

%% Fetching atlases and annotations

from neuromaps import datasets

fslr = datasets.fetch_atlas(atlas='fslr', density='32k') print(fslr.keys())

import nibabel as nib lsphere, rsphere = fslr['sphere'] lvert, ltri = nib.load(lsphere).agg_data() print(lvert.shape, ltri.shape)

annotations = datasets.available_annotations() print(f'Available annotations: {len(annotations)}')

volume_annotations = datasets.available_annotations(format='volume') print(f'Available volumetric annotations: {len(volume_annotations)}')

annot = datasets.available_annotations(source='abagen', desc='genepc1', space='fsaverage', den='10k') print(annot)

tags = datasets.available_tags() print(tags)

fmri_annotations = datasets.available_annotations(tags='fMRI') print(fmri_annotations)

abagen = datasets.fetch_annotation(source='abagen', desc='genepc1') print(abagen)

abagen = datasets.fetch_annotation(source='abagen', desc='genepc1', return_single=True) print(abagen)

%% Using spatial null models

from neuromaps import datasets nsynth = datasets.fetch_annotation(source='neurosynth', return_single=True) genepc = datasets.fetch_annotation(desc='genepc1', return_single=True) print('Neurosynth: ', nsynth) print('Gene PC1: ', genepc)

from neuromaps import resampling nsynth, genepc = resampling.resample_images(src=nsynth, trg=genepc, src_space='MNI152', trg_space='fsaverage', resampling='transform_to_alt', alt_spec=('fsaverage', '10k')) print(nsynth, genepc)

from neuromaps import stats corr = stats.compare_images(nsynth, genepc) print(f'Correlation: r = {corr:.02f}')

Code of Conduct

• [X] I agree to follow the neuromaps Code of Conduct

[liuzhenqi77]

Hi, this should have been fixed in the github main branch. We recommend installing from github to get the latest features and bug fixes. We have also just released a new PyPI version. Could you please update the package and let us know if it works for you? Thanks!

[liuzhenqi77]

Close due to inactivity. Please feel free to reopen if issue persists.

[psyzxy]

I use "pip install neuromaps" to install neuromaps. When I input "from neuromaps import datasets fslr = datasets.fetch_atlas(atlas='fslr', density='32k') print(fslr.keys())" in Spyder. I got an error AttributeError: module 'neuromaps.datasets' has no attribute 'fetch_atlas'